Job Description P0AEM9 Confidence 21.81% Date Thu Jan 5 11:23:44 GMT 2012 Rank 102 Aligned Residues 100 % Identity 12% Template c2qpqC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:protein bug27; PDBTitle: structure of bug27 from bordetella pertussis Resolution 1.92 Å

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		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	Y	E	E	W	L	R	Q	N	V	Q	G	V	D	V	R	T	Y	D	D	D	P	T	K	Y	Q	D	L	R	V	G	R	I	D	A	I	L	V	D	R	L	A	A	L	D	L	V	K	K	T	N	D	T	L	A	V	T	G	E	A	F	S	R	Q	E	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	G	E	L	L	N	V	S	A	K	T	H	M	V	H	V	P	Y	K	G	C	G	P	A	L	N	D	V	L	G	S	Q	I	G	L	A	V	V	T	A	S	S	A	I	P	F	I	K	A	G	K	L	Q	A	L	A	V	T	S	K	E	R	S	A	L	L	P	E	V	P	T	V	A	E	Q	G	V	A	G	Y
Template Known Secondary structure											T									S	S										T	T	S	S	S															T	T	S							S	S	S	S			T	T		T	T	S		B	S	G	G	G	T		T	T
Template Predicted Secondary structure
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
								225	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.								.
Query SS confidence		.	.	.	.	.	.								.
Query Sequence		.	.	.	.	.	.	G	V	A	L	R	K	G	.	N	E	D	L	L	K	A	V	N	D	A	I	A	E	M	Q	K	D	G	T	L	Q	A	L	S	E	K
Query Conservation		.	.	.	.	.	.								.
Alig confidence		.	.	.	.	.	.								.
Template Conservation
Template Sequence		E	L	N	Q	W	H	G	L	L	V	P	G	A	T	P	M	A	V	R	Q	K	L	Y	D	G	I	A	K	V	M	Q	R	D	D	V	Q	K	K	L	A	D
Template Known Secondary structure													T	T	S
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions