Job Description P0AEM9 Confidence 20.41% Date Thu Jan 5 11:23:44 GMT 2012 Rank 104 Aligned Residues 175 % Identity 13% Template c2pfzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: crystal structure of dctp6, a bordetella pertussis2 extracytoplasmic solute receptor binding pyroglutamic acid Resolution 1.80 Å

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		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.							90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	F	A	Q	Q	L	A	K	H	L	G	V	E	A	S	L	K	P	T	K	W	.	.	.	.	.	.	D	G	M	L	A	S	L	D	S	K	R	I	D	V	V	I	N	Q	V	T	I	S	D	E	R	K	K	K	Y	D	F	S	T	P	Y	T	I	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																							.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	F	V	K	D	V	D	S	L	S	G	G	K	L	K	I	T	L	H	N	N	A	S	L	Y	K	A	P	E	I	K	R	A	V	Q	G	N	Q	A	Q	I	G	E	I	L	L	T	N	F	A	N	E	D	P	V	Y	E	L	D	G	L	P	F	L	A	T	G	Y	D	A	S	F	K	L	Y	Q	A	Q	K	P
Template Known Secondary structure												T	T	S								T	T	S	S	S		G	G	G							T	T	S	S	S						G	G	G	G	T	T	T		G	G	G	T	G	G	G	S	T	T	S			S
Template Predicted Secondary structure
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
																		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	Q	A	L	V	K	K	G	N	E	G	T	I	K	T	A	D	D	L	K	G	K	K	V	G	V	G	L	G	T	N	Y	E	E	W	L	R	Q	N	V	Q	G	V	D	V	R	T	Y	D	D	D	P	T	K	Y	Q	D	L	R	V	G	R	I
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.																												.	.	.
Template Conservation																																														.																												.	.	.
Template Sequence		F	L	E	K	K	L	A	S	Q	G	M	M	L	L	Y	S	V	A	W	P	P	Q	G	I	F	A	N	R	D	I	K	Q	V	S	D	M	K	G	L	K	W	R	A	Y	.	S	P	V	T	A	K	I	A	E	L	V	G	A	Q	P	V	T	V	Q	Q	A	E	L	A	Q	A	M	.	.	.	A	T	G	V	I
Template Known Secondary structure									T	T	T																	S	S			S	S	G	G	G	G	T	T						S	.	S											T								G	G	G						.	.	.		T	T	S
Template Predicted Secondary structure																																														.																												.	.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.				.	.	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.						.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.
Query SS confidence																																										.	.	.	.	.
Query Sequence		D	A	I	L	V	D	R	L	A	A	L	D	L	V	K	K	T	N	D	T	L	A	V	T	G	E	A	F	S	R	Q	E	S	G	V	A	L	R	K	G	.	.	.	.	.	N	E	D	L	L	K	A	V	N	D	A	I	A	E	M	Q	K
Query Conservation																																										.	.	.	.	.
Alig confidence												.																														.	.	.	.	.
Template Conservation												.
Template Sequence		D	S	Y	M	S	S	G	S	T	G	.	F	D	T	K	T	Y	E	Y	I	K	K	F	Y	D	T	E	A	W	L	P	K	N	A	V	L	V	N	K	K	A	F	D	A	L	D	P	A	T	Q	Q	A	L	K	K	A	G	A	Q	A	E	E
Template Known Secondary structure		S										.			T	T	G	G	G	T																									T	S
Template Predicted Secondary structure												.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions