Job Description P0AEM9 Confidence 92.11% Date Thu Jan 5 11:23:44 GMT 2012 Rank 59 Aligned Residues 214 % Identity 13% Template c2i4cA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:bicarbonate transporter; PDBTitle: crystal structure of bicarbonate transport protein cmpa from2 synechocystis sp. pcc 6803 in complex with bicarbonate and calcium Resolution 1.70 Å

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		39	40	.	.	.	.	.	.	.	.	.			50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure													.	.																																	.							.																	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.																																	.							.																	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	R	G	T	L	L	V	G	L	E	G	.	.	T	Y	P	P	F	S	F	Q	G	D	D	G	K	L	T	G	F	E	V	E	F	A	Q	Q	L	A	K	H	L	G	V	E	.	A	S	L	K	P	T	.	K	W	D	G	M	L	A	S	L	D	S	K	R	I	D	V	.	.	.	.	.	.	.	.	.	.	.
Query Conservation													.	.																																	.							.																	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.													.	.	.	.	.	.	.	.	.	.	.	.									.							.																	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	T	A	N	I	K	L	G	Y	I	P	I	V	E	A	A	P	L	I	I	A	Q	E	K	G	.	.	.	.	.	.	.	.	.	.	.	.	F	F	A	K	Y	G	M	T	G	V	E	V	S	K	Q	A	N	W	A	S	A	R	D	N	V	T	I	G	S	Q	G	G	G	I	D	G	G	Q	W	Q	M	P	M
Template Known Secondary structure		S		S								S	S	G	G	G									T	T	.	.	.	.	.	.	.	.	.	.	.	.					T	T		T								S	S												T	T	T	T	S		S						T	T
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.													.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
																		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																																.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																																.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	N	Q	V	T	I	S	D	E	R	K	K	K	Y	D	F	S	T	P	Y	T	I	S	G	I	Q	A	L	V	K	K	G	N	E	G	T	I	K	T	A	D	D	L	K	G	K	K	V	G	V	G	L	G	T	N	Y	E	E	W	L	R	Q	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																																.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																																.
Template Conservation
Template Sequence		P	H	L	I	T	E	G	I	I	T	N	G	N	K	V	P	M	Y	V	L	A	Q	L	I	T	Q	G	N	G	I	A	V	A	P	M	H	E	G	K	G	V	N	L	D	I	T	K	A	A	D	Y	I	K	G	F	N	K	T	N	G	R	K	F	K	A	A	H	T	F	P	N	V	N	Q	D	F	W	I	R	Y
Template Known Secondary structure							T	T	T	T	T	T	T													B									G	G	G	T	T	T	T		S	S			G	G	G						T						S	S							S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
									167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.			.	.	.	.	.	230	.					.	.
Predicted Secondary structure		.	.	.	.	.	.	.																																																											.	.								.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																																																											.	.								.	.	.	.
Query Sequence		.	.	.	.	.	.	.	N	V	Q	G	V	D	V	R	T	Y	D	D	D	P	T	K	Y	Q	D	L	R	V	G	R	I	D	A	I	L	V	D	R	L	A	A	L	D	L	V	K	K	T	N	D	T	L	A	V	T	G	E	A	F	S	R	Q	E	S	.	.	G	V	A	L	R	K	G	.	.	.	.	N	E
Query Conservation		.	.	.	.	.	.	.																																																											.	.								.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																																											.	.								.	.	.	.
Template Conservation
Template Sequence		W	F	A	A	G	G	V	D	P	D	T	D	I	D	L	L	A	V	P	P	A	E	T	V	Q	G	M	R	N	G	T	M	D	A	F	S	T	G	D	P	W	P	Y	R	I	V	T	E	N	I	G	Y	M	A	G	L	T	A	Q	I	W	P	Y	H	P	E	E	Y	L	A	I	R	A	D	W	V	D	K	N	P
Template Known Secondary structure						T	T			T	T	T	T	S																	T									T	T								T	T	S											S	T	T
Template Predicted Secondary structure
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.								.	250	.	.	.	.	.	.	.			.	.	260	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.										.	.
Query SS confidence																	.	.	.	.	.	.	.										.	.
Query Sequence		D	L	L	K	A	V	N	D	A	I	A	E	M	Q	K	.	.	.	.	.	.	.	D	G	T	L	Q	A	L	S	E	.	.	K	W	F	G	A	D	V
Query Conservation																	.	.	.	.	.	.	.										.	.
Alig confidence																	.	.	.	.	.	.	.										.	.
Template Conservation
Template Sequence		K	A	T	K	A	L	L	K	G	I	M	E	A	Q	Q	W	I	D	D	P	K	N	R	P	E	V	V	Q	I	V	S	G	R	N	Y	F	N	V	P	T
Template Known Secondary structure																				S	G	G	G										S	T	T	T	T		S		T
Template Predicted Secondary structure
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions