Job Description P33346 Confidence 18.18% Date Thu Jan 5 11:51:48 GMT 2012 Rank 25 Aligned Residues 66 % Identity 9% Template c3gkuB_ PDB info PDB header:rna binding protein Chain: B: PDB Molecule:probable rna-binding protein; PDBTitle: crystal structure of a probable rna-binding protein from clostridium2 symbiosum atcc 14940 Resolution 2.95 Å

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		893	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.																										910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	E	F	L	Q	V	V	A	E	N	R	G	L	S	Q	E	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	D	R	L	V	P	T	L	G	L	D	D	P	Q	A	L	S	F	D	F	G	P	R	Q	F	T	V	R	F	D	E	N	L	N	P	V	I
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	E	A	V	T	K	A	L	I	E	L	Q	T	T	S	D	K	L	T	Y	E	I	V	K	P	A	I	I	R	A	K	R	K	E	T	L	Q	D	K	A	I	E	F	L	E	Q	V	F	D	A	X	N	X	A	V	D	I	S	V	E	Y	N	E	T	E	K	E	X	N	V	N	L	K	G	D	D	X	G	I	L
Template Known Secondary structure												T	T			G	G	G																																		T	T											T	T	T	T								S	G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		948	.	950	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	Q	Q	N	V	R	Q	K	S	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	G	K	R	G	Q	T	L	D	S	L
Template Known Secondary structure		T	T	T
Template Predicted Secondary structure
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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