Job Description P45524 Confidence 99.96% Date Thu Jan 5 12:02:54 GMT 2012 Rank 17 Aligned Residues 281 % Identity 10% Template c2y6vB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:peroxisomal membrane protein lpx1; PDBTitle: peroxisomal alpha-beta-hydrolase lpx1 (yor084w) from2 saccharomyces cerevisiae (crystal form i) Resolution 2.83 Å

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		52	.	.	.	.	.	.	.	60	.	.	.	.							.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.								.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.																																							.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.																																							.	.	.	.	.	.	.
Query Sequence		L	P	D	G	D	F	V	D	L	A	W	S	E	.	.	.	.	.	.	N	P	A	Q	A	Q	H	K	P	R	L	V	V	F	H	G	L	E	G	S	L	N	S	P	Y	A	H	G	L	V	E	A	A	Q	K	R	G	W	.	.	.	.	.	.	.	L	G	V	V	M	H	F	R	G	C	S	G	E	P	N	R
Query Conservation															.	.	.	.	.	.																																							.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.																									.	.													.	.	.	.	.	.	.
Template Conservation																																													.	.
Template Sequence		T	L	A	T	D	R	L	E	L	T	Y	D	V	Y	T	S	A	E	R	R	R	S	R	T	A	T	R	L	N	L	V	F	L	H	G	S	G	M	S	K	V	V	W	.	.	E	Y	Y	L	P	R	L	V	A	A	D	A	E	G	N	Y	A	I	D	K	V	L	L	I	D	Q	V	N	H	G	D	S	A	V	R
Template Known Secondary structure		B																S						T	T												T	T			G	G	G	G	.	.	G	G	G	G	G	G	S					T	T	T													T	T	S
Template Predicted Secondary structure																																													.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.			.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		119	120	.	.						.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.																		.																																															.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.																		.																																															.	.	.	.	.	.	.
Query Sequence		M	H	R	I	.	.	.	.	.	Y	H	S	G	E	T	E	D	A	S	W	F	L	R	W	L	Q	.	R	E	F	G	H	A	P	T	A	A	V	G	Y	S	L	G	G	N	M	L	A	C	L	L	A	K	E	G	N	D	L	P	V	D	A	A	V	I	V	S	A	P	F	M	L	E	.	.	.	.	.	.	.
Query Conservation						.	.	.	.	.																		.																																															.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.																		.																																															.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	R	G	R	L	G	T	N	F	N	W	I	D	G	A	R	D	V	L	K	I	A	T	E	L	G	S	I	D	S	H	P	A	L	N	V	V	I	G	H	S	M	G	G	F	Q	A	L	A	C	D	V	L	Q	P	N	L	F	H	L	L	I	L	I	E	P	V	V	I	T	R	K	A	I	P	P	D	S	P	Q
Template Known Secondary structure		T	T	T	T	B		S																					G	G	G		S									T														T	T	S		S						S				S							T	T
Template Predicted Secondary structure
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	C	S	Y	H	M	E	K	G	F	S	R	V	Y	Q	R	Y	L	L	N	L	L	K	A	N	A	A	R	K	L	A	A	Y	P	G	T	L	P	I	N	L	A	Q	L	K	S	V	R	R	I	R	E	F	D	D	L	I	T	A	R	I	H	G	Y	A	D	A	I	D	Y	Y	R	Q	C	S	A	M	P	M	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	P	E	N	L	Y	N	S	L	R	L	K	T	D	H	F	A	N	E	S	E	Y	V	K	Y	M	R	N	G	S	F	F	T	N	A	H	S	Q	I	L	Q	N	I	I	D	F	E	R	T	K	G	P	V	R	T	K	M	E	Q	A	Q	N	L	L	C	Y	M	N	M	Q	T	F	A	P	F	L	I	S	N	V
Template Known Secondary structure													T					S	S											T	S	S		T	T	S																					S	S								T	T	S		G	G	G	T						T	T	G
Template Predicted Secondary structure
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence		N	R	I	A	K	P	T	L	I	I	H	A	K	D	D	P	F	M	D	H	Q	V	I	P	K	P	E	S	L	P	P	Q	V	E	Y	Q	L	T	E	H	G	G	H	V	G	F	I	G	G	T	L	L	H	P	Q	M	W	L	E	S	R	I	P	D	W	L	T	T	Y	L	E	A	K	S	C
Query Conservation
Alig confidence																					.																																	.	.	.	.	.
Template Conservation																					.																																	.	.	.	.	.
Template Sequence		K	F	V	R	K	R	T	I	H	I	V	G	A	R	S	N	W	P	P	.	Q	N	Q	L	F	L	Q	K	T	L	Q	N	Y	H	L	D	V	I	P	G	G	S	H	L	V	N	V	E	A	P	D	L	.	.	.	.	.	V	I	E	R	I	N	H	H	I	H	E	F	V	L	T	S	P	L
Template Known Secondary structure		G	G			S								T	T						.											S	S							T	T			T	T					S				.	.	.	.	.
Template Predicted Secondary structure																					.																																	.	.	.	.	.
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.						.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions