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Job DescriptionP45524
Confidence99.85%DateThu Jan 5 12:02:54 GMT 2012
Rank134Aligned Residues246
% Identity16%Templatec2xe4A_
PDB info PDB header:hydrolase/inhibitorChain: A: PDB Molecule:oligopeptidase b; PDBTitle: structure of oligopeptidase b from leishmania major
Resolution1.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  YWQRLELPDGDFVDLAWSENPA. . QAQHKPRLVVFHGLEGSLNSPYAHGLVEAAQKRGWLGVVMHFRGCSGEPNRM. . . .
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Template Sequence  ERRFATAPDQTKIPLSVVYHKDLDMSQPQPCMLYGYGSYGLSMDPQFSIQHLPYCDRGMIFAIAHIRGGSELGRAWYEIG
Template Known Secondary structure 
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   461........470.........480.........490.........500.........510.........520.........530.........540
 
   120.........130.........140. ........150.........160.........170.........180.........190......
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Query Sequence  . HRIYHSGETEDASWFLRWLQRE. . FGHAPTAAVGYSLGGNMLACLLAKEGNDLPVDAAVIVSAPFMLEACSYHMEKGFS
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Template Sequence  AKYLTKRNTFSDFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMGAVLNMRPD. . LFKVALAGVPFVDVMTTMCDPSIPLT
Template Known Secondary structure  SSGGGTTTS

GGGT
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   541........550.........560.........570.........580.........590.. .......600.........610........
 
   197..200.........210.........220.........230.........240.........250.........260.........270. ....
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Query Sequence  RVYQRYLLNLLKANAARKLAAYPGTLPINLAQLKSVRRIREFDDLITARIHGYADAIDYYRQCSAMPMLNRIAKP. TLII
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Template Sequence  TGEWEEWGNPNEYKYYDYMLSY. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SPMDNVRAQEYPNIMVQ
Template Known Secondary structure  TTTT

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   619620.........630.........640 .........650.......
 
   276...280.........290.... .....300.........310.........320.........330.......
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Query Sequence  HAKDDPFMDHQVIPKPESL. . . . . . . PPQVEYQLTEHGGHVGFIGGTLLHPQMWLESRIPDWLTTYLEA
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Template Sequence  CGLHDPRVAYWEPAKWVSKLRECKTDNNEILLNIDMESGHFS. . . AKDRYKFWKESAIQQAFVCKHLKS
Template Known Secondary structure  TT
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   658.660.........670.........680.........690......... 700.........710.........720...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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