Job Description P45524 Confidence 99.87% Date Thu Jan 5 12:02:54 GMT 2012 Rank 124 Aligned Residues 248 % Identity 13% Template c1pjaA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:palmitoyl-protein thioesterase 2 precursor; PDBTitle: the crystal structure of palmitoyl protein thioesterase-2 reveals the2 basis for divergent substrate specificities of the two lysosomal3 thioesterases (ppt1 and ppt2) Resolution 2.70 Å

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		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100			.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.
Query SS confidence																																.	.
Query Sequence		H	K	P	R	L	V	V	F	H	G	L	E	G	S	L	N	S	P	Y	A	H	G	L	V	E	A	A	Q	K	R	.	.	G	W	L	G	V	V	M	H	F	R	G	C	S	G	E	P	N	R	M	H	R	I	Y	H	S	G	E	T	E	D	A	S	W	F	L	R	W	L	Q	R	E	F	G	H	A	P	T	A
Query Conservation																																.	.
Alig confidence																				.	.											.	.																		.	.	.	.	.																						.
Template Conservation																				.	.																														.	.	.	.	.																						.
Template Sequence		S	Y	K	P	V	I	V	V	H	G	L	F	D	S	S	Y	S	F	.	.	R	H	L	L	E	Y	I	N	E	T	H	P	G	T	V	V	T	V	L	D	L	F	D	G	R	E	S	L	R	.	.	.	.	.	P	L	W	E	Q	V	Q	G	F	R	E	A	V	V	P	I	M	A	K	A	P	.	Q	G	V	H
Template Known Secondary structure												T	T			G	G	G	G	.	.											S	T	T								S	S		S	G	G	G	G	S	.	.	.	.	.																					T	.	T
Template Predicted Secondary structure																				.	.																														.	.	.	.	.																						.
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.			.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.						.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.		.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	G	Y	S	L	G	G	N	M	L	A	C	L	L	A	K	E	G	N	D	L	P	V	D	A	A	V	I	V	S	A	P	F	M	L	E	A	C	S	Y	H	M	E	K	G	F	S	R	V	Y	Q	R	Y	L	L	N	L	L	K	A	N	A	A	R	K	L	A	A	Y	P	G	T	L	P	I	N	L	A	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	I	C	Y	S	Q	G	G	L	V	C	R	A	L	L	S	V	M	D	D	H	N	V	D	S	F	I	S	L	S	S	P	Q	M	G	Q	Y	G	D	T	D	Y	L	K	W	L	F	P	T	S	M	R	S	N	L	Y	R	I	C	Y	S	P	W	G	Q	E	F	S	I	C	N	Y	W	H	D	P	H	H	D	D
Template Known Secondary structure						T														T	T										S			T	T		B		S										T	T											T	S	T	T	G	G	G	S	T	G	G	G	G	B			T	T
Template Predicted Secondary structure
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
										229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																																																																		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																																																																		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	L	K	S	V	R	R	I	R	E	F	D	D	L	I	T	A	R	I	H	G	Y	A	D	A	I	D	Y	Y	R	Q	C	S	A	M	P	M	L	N	R	I	A	K	P	T	L	I	I	H	A	K	D	D	P	F	M	D	H	Q	V	I	P	K	P	E	S	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.																																																																		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																																																																		.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	Y	L	N	A	S	S	F	L	A	L	I	N	G	E	R	D	H	P	N	A	T	V	W	R	K	N	F	L	R	V	G	H	L	V	L	I	G	G	P	D	D	G	V	I	T	P	W	Q	S	S	F	F	G	F	Y	D	A	N	E	T	V	L	E	M	E	E	Q	L	V	Y	L	R	D	S	F	G	L	K	T
Template Known Secondary structure								S	S					T	T	S	S			T	T									T	T		S								T	T		S	S	S	S	S	G	G	G	G	G	T					T	T						G	G	G	S					T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
				294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	L	P	P	Q	V	E	Y	Q	L	T	E	H	G	G	H	V	G	F	I	G	G	T	L	L	H	P	Q	M	W	L	E	S	R	I	P	D	W	L
Query Conservation		.	.
Alig confidence		.	.																									.	.	.	.	.
Template Conservation																												.	.	.	.	.
Template Sequence		L	L	A	R	G	A	I	V	R	C	P	M	A	G	I	S	H	T	A	W	H	S	N	R	T	L	.	.	.	.	.	Y	E	T	C	I	E	P	W	L
Template Known Secondary structure					T	T								S	S			T	T	T	T	T	S					.	.	.	.	.					T	G	G	G
Template Predicted Secondary structure																												.	.	.	.	.
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.						.	.	.	.	.	.	.	300	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions