Return to main results Retrieve Phyre Job Id

Job DescriptionP76344
Confidence27.33%DateThu Jan 5 12:22:06 GMT 2012
Rank6Aligned Residues85
% Identity12%Templated1nkga3
SCOP infoSupersandwich Galactose mutarotase-like Rhamnogalacturonase B, RhgB, N-terminal domain
Resolution1.50

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   100.........110.... .... .120.........130.........140.........150.........160.........170.....
Predicted Secondary structure 







....



























Query SS confidence 














. . .



.
























































Query Sequence  GYATDIEMIGIEDGI. . . VEFH. RNNETTSCKYDYDGYKILTYKSGKKGVRYLFECKDPESKAPKYIQFSDHIIAPRKSS
Query Conservation 

 


  
 




...


 .  

     




  

 

 
  



 


 
 

  

 







 
 
  
Alig confidence 














...



.

















































..




Template Conservation 
 
      


 
  



 

 
  
 



 
 
 
       
 
 



            
 

   ..  

 
Template Sequence  GITTSSSAYVIDTNAPNQLKFTVSRSSCDITSIIHYGTELQYSSQGSHIGSGLGSATVTATQSGDYIKVTCVT. . DTLTQ
Template Known Secondary structure 
SS


TT
TTT

TT
B
SSS
BTT

SS
TT
..SS
Template Predicted Secondary structure 

































..

Template SS confidence 















































































   3......10.........20.........30.........40.........50.........60.........70..... ....80
 
   176...180......
Predicted Secondary structure 


Query SS confidence 










Query Sequence  HFHIFMGNDSQ
Query Conservation 


   
 
  
Alig confidence 










Template Conservation    
 
 




Template Sequence  YMVVHNGDPII
Template Known Secondary structure  TT

Template Predicted Secondary structure 




Template SS confidence 










   81........90.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions