Job Description P0AAV8 Confidence 100.00% Date Thu Jan 5 11:13:57 GMT 2012 Rank 1 Aligned Residues 346 % Identity 38% Template c3g7kD_ PDB info PDB header:isomerase Chain: D: PDB Molecule:3-methylitaconate isomerase; PDBTitle: crystal structure of methylitaconate-delta-isomerase Resolution 2.70 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	P	C	V	M	M	R	G	G	T	S	R	G	A	F	L	L	A	E	H	L	P	E	D	Q	T	Q	R	D	K	I	L	M	A	I	M	G	S	G	N	D	L	E	I	D	G	I	G	G	G	N	P	L	T	S	K	V	A	I	I	S	R	S	S	D	P	R	A	D	V	D	Y	L	F	A	Q	V	I	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	I	P	C	V	I	M	R	A	G	T	S	K	G	I	F	L	K	G	N	D	L	P	A	D	Q	E	L	R	D	K	V	I	L	R	I	F	G	S	P	D	V	R	Q	I	D	G	L	A	G	A	D	P	L	T	S	K	L	A	I	I	G	P	S	T	H	P	D	A	D	V	D	Y	T	F	A	Q	V	S	I
Template Known Secondary structure											T	T								G	G	G	S		S	S													T		S		T	T		T	T	S	S	S		S	S	G	G	G											S	T	T		S										S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	E	Q	R	V	D	T	T	P	N	C	G	N	M	L	S	G	V	G	A	F	A	I	E	N	G	L	I	A	A	T	S	P	V	T	R	V	R	I	R	N	V	N	T	G	T	F	I	E	A	D	V	Q	T	P	N	G	V	V	E	Y	E	G	S	A	R	I	D	G	V	P	G	T	A	A	P	V	A	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	D	A	V	V	D	Y	N	G	N	C	G	N	I	S	A	G	V	G	P	F	A	I	D	E	S	F	V	K	A	V	E	P	M	T	R	V	C	I	H	N	T	N	T	G	K	L	L	Y	A	E	V	E	V	E	D	G	K	A	K	V	S	G	D	C	K	I	D	G	V	P	G	T	N	A	P	E	L	M	D
Template Known Secondary structure		S	S	S					S	S			T	T	G	G	G	G								T	T	S	S				S	S									T	T	T												T	T							S	B			T	T	S	S	S		B
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.					.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.
Query SS confidence																									.	.	.	.
Query Sequence		F	L	N	A	A	G	T	K	T	G	K	V	F	P	T	D	N	Q	I	D	Y	F	D	.	.	.	.	D	V	P	V	T	C	I	D	M	A	M	P	V	V	I	I	P	A	E	Y	L	G	K	T	G	Y	E	L	P	A	E	L	D	A	D	K	A	L	L	A	R	I	E	S	I	R	L	Q	A	G	K	A	M
Query Conservation																									.	.	.	.
Alig confidence																									.	.	.	.
Template Conservation
Template Sequence		F	S	D	T	A	G	A	A	T	G	K	V	L	P	T	G	N	V	V	D	V	L	S	T	S	K	G	D	I	D	V	S	I	V	D	V	A	N	P	C	I	F	V	H	A	K	D	V	N	M	T	G	T	E	T	P	D	V	I	N	G	N	A	D	L	L	A	Y	L	E	E	I	R	A	K	C	C	V	K	I
Template Known Secondary structure			G	G	G	B	T	T	T	T	S	S	S	S	T	T	S		S	S						T	T	S									B	S	S							S	G	G	G	T			S									T
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		239	240	.	.	.	.	.	.	.							.	.	250	.	.	.	.	.	.	.	.	.	260	.	.														.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	L	G	D	V	S	N	M	V	.	.	.	.	.	.	I	P	K	P	V	L	I	S	P	A	Q	K	G	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	I	N	V	R	Y	F	M	P	H	S	C	H	R	A	L	A	I	T	G	A	I	A	I	S	S	S	C	A	L	E	G	T	V	T	R	Q	I
Query Conservation											.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	M	A	A	T	E	K	E	A	S	E	K	S	P	A	F	P	M	I	A	F	V	T	K	P	E	D	Y	V	D	F	S	T	G	N	T	I	S	G	D	D	V	D	L	V	S	R	L	M	F	M	Q	V	L	H	K	T	Y	A	G	T	A	T	A	C	T	G	S	A	A	R	I	P	G	T	I	V	N	Q	V
Template Known Secondary structure		T	S		S	S									S	S	S	S														T	T	T						T	T	S		S								T	T				S	S														T	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		300	.	.	.	.	.		.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		V	P	S	V	G	Y	.	G	N	I	N	I	E	H	P	S	G	A	L	D	V	H	L	S	N	E	G	Q	D	A	T	T	L	R	A	S	V	I	R	T	T	R	K	I	F	S	G	E	V	Y	L	P
Query Conservation								.
Alig confidence								.																					.	.
Template Conservation																													.	.
Template Sequence		L	R	D	T	G	D	E	D	T	V	R	I	G	H	P	A	G	V	I	P	V	V	S	I	V	K	D	.	.	G	K	V	E	K	A	A	L	I	R	T	A	R	R	I	M	E	G	Y	V	Y	V	E
Template Known Secondary structure		S				T	T									T	T											T	.	.	T
Template Predicted Secondary structure																													.	.
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.			.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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