Job Description P0AAV8 Confidence 97.99% Date Thu Jan 5 11:13:57 GMT 2012 Rank 9 Aligned Residues 234 % Identity 16% Template c3ekmE_ PDB info PDB header:isomerase Chain: E: PDB Molecule:diaminopimelate epimerase, chloroplastic; PDBTitle: crystal structure of diaminopimelate epimerase form2 arabidopsis thaliana in complex with irreversible inhibitor3 dl-azidap Resolution 2.30 Å

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		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.							.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.
Query Sequence		V	A	I	I	S	R	S	S	D	P	R	A	D	V	D	Y	L	F	A	Q	V	I	V	H	E	Q	R	V	D	T	T	P	N	C	G	N	M	L	S	G	V	G	A	F	A	I	E	N	G	L	I	A	A	T	S	.	.	.	.	.	.	P	V	T	R	V	R	I	R	N	V	N	T	G	T	F	I	E	A	D
Query Conservation																																																									.	.	.	.	.	.
Alig confidence										.										.	.											.	.	.																							.	.	.	.	.	.															.
Template Conservation										.										.	.											.	.	.																																											.
Template Sequence		V	I	F	A	M	P	G	V	.	N	G	T	D	Y	A	M	R	I	.	.	F	N	S	D	G	S	E	P	E	M	.	.	.	C	G	N	G	V	R	C	F	A	R	F	I	A	E	L	E	N	L	Q	G	K	H	S	F	T	I	H	T	G	A	G	L	I	V	P	E	I	Q	D	D	G	Q	.	V	K	V	D
Template Known Secondary structure									S	.	T	T		S						.	.			T	T	S				S		.	.	.																	T			S	S								T	T									T	T	S		.
Template Predicted Secondary structure										.										.	.											.	.	.																																											.
Template SS confidence
		72	.	.	.	.	.	.	.		80	.	.	.	.	.	.	.	.			.	90	.	.	.	.	.	.	.	.				.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140		.	.	.	.
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	T	P	N	G	V	V	E	Y	E	G	S	A	R	I	D	G	V	P	G	T	A	A	P	V	A	L	T	F	L	N	A	A	G	T	K	T	G	K	V	F	P	T	D	N	Q	I	D	Y	F	D	D	V	P	V	T	C	I	D	M	A	M	P	V	V	I	I	P	A	E	Y	L	G	K	T	G	Y	E	L
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template Sequence		M	G	T	P	I	L	K	A	Q	D	V	P	T	K	L	S	G	N	K	G	E	A	V	V	E	A	E	L	V	V	D	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	W	N	V	T	C	V	S	M	G	N	P	H	C	I	T	F	G	K	K	G	G	P	N	L	K	V	.
Template Known Secondary structure						B			G	G	G	T	T		S	S			S	B	T	T	B			S						T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S	S	S						S	S	B	T	T						G	.
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.																				.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	E	L	D	A	D	K	A	L	L	A	R	I	E	S	I	R	L	Q	A	G	K	A	M	G	L	G	D	V	S	N	M	V	I	P	K	P	V	L	I	S	P	A	Q	K	G	G	A	I	N	V	R	Y	F	M	P	H	S	C	H	R	A	L	A	I	T	G	A	I	A	I	S	S	S	C	A	L	E	G
Query Conservation
Alig confidence		.	.															.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Conservation		.	.															.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Sequence		.	.	D	D	L	N	L	P	E	I	G	P	K	F	E	H	.	.	.	.	.	.	.	.	.	.	.	.	H	E	M	F	P	A	R	T	N	T	E	F	V	E	V	L	S	R	S	.	H	L	K	M	R	V	W	E	R	G	A	G	A	T	L	A	C	G	T	G	A	C	A	L	V	V	A	A	V	L	E	G
Template Known Secondary structure		.	.	G	G												T	.	.	.	.	.	.	.	.	.	.	.	.		T	T		T	T												T	T	.									T	T	T				S																T	T
Template Predicted Secondary structure		.	.															.	.	.	.	.	.	.	.	.	.	.	.																				.
Template SS confidence
				205	.	.	.	.	210	.	.	.	.	.	.	.	.													.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	T	R	Q	I	V	P	S	V	G	Y	G	N	I	N	I	E	H	P	S	G	A	L	D	V	H	L	S	N	E	G	Q	D	A	T	T	L	R	A	S	V	I	R	T	T	R	K	I	F	S	G	E	V	Y	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	R	A	D	R	K	C	T	V	D	L	P	G	G	P	L	E	I	E	W	K	Q	E	D	N	H	.	.	.	.	.	I	Y	M	T	G	P	A	E	A	V	F	Y	G	S	A	L	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	S	S		S							T	T									T	T	T	S		.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Template SS confidence
											270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.						.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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