Job Description P0AAV8 Confidence 100.00% Date Thu Jan 5 11:13:57 GMT 2012 Rank 2 Aligned Residues 345 % Identity 39% Template c2pw0A_ PDB info PDB header:unknown function Chain: A: PDB Molecule:prpf methylaconitate isomerase; PDBTitle: crystal structure of trans-aconitate bound to methylaconitate2 isomerase prpf from shewanella oneidensis Resolution 1.57 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.					30	.	.	.	.	.	.	.	.	.	40	.	.	.	.			.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.																.	.
Query SS confidence																														.	.	.	.																.	.
Query Sequence		K	K	I	P	C	V	M	M	R	G	G	T	S	R	G	A	F	L	L	A	E	H	L	P	E	D	Q	T	.	.	.	.	Q	R	D	K	I	L	M	A	I	M	G	S	G	N	D	.	.	L	E	I	D	G	I	G	G	G	N	P	L	T	S	K	V	A	I	I	S	R	S	S	D	P	R	A	D	V	D	Y
Query Conservation																														.	.	.	.																.	.
Alig confidence																														.	.	.	.																.	.
Template Conservation
Template Sequence		I	K	V	A	A	T	Y	M	R	G	G	T	S	K	G	V	F	F	R	L	Q	D	L	P	E	A	A	Q	V	P	G	P	A	R	D	A	L	L	L	R	V	I	G	S	P	D	P	Y	A	K	Q	I	D	G	M	G	G	A	T	S	S	T	S	K	T	V	I	L	S	H	S	S	K	A	N	H	D	V	D	Y
Template Known Secondary structure												T	T								G	G	G	S		G	G	G	S	S	S	S												T		S		T	T	S	S		T	T	S	S			S	S	T	T	T	S										S	T	T		S
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.					.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																						.	.	.	.
Query SS confidence																																						.	.	.	.
Query Sequence		L	F	A	Q	V	I	V	H	E	Q	R	V	D	T	T	P	N	C	G	N	M	L	S	G	V	G	A	F	A	I	E	N	G	L	I	A	.	.	.	.	A	T	S	P	V	T	R	V	R	I	R	N	V	N	T	G	T	F	I	E	A	D	V	Q	T	P	N	G	V	V	E	Y	E	G	S	A	R	I	D	G
Query Conservation																																						.	.	.	.
Alig confidence																																						.	.	.	.
Template Conservation
Template Sequence		L	F	G	Q	V	S	I	D	K	P	F	V	D	W	S	G	N	C	G	N	L	T	A	A	V	G	A	F	A	I	S	N	G	L	I	D	A	A	R	I	P	R	N	G	V	C	T	V	R	I	W	Q	A	N	I	G	K	T	I	I	A	H	V	P	I	T	D	G	A	V	Q	E	T	G	D	F	E	L	D	G
Template Known Secondary structure								S	S	S	S					S	S			T	T	T											T	T		S		G	G	G			S	S										T	T	T	T											T	T							S	B			T	T
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.						.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.
Query SS confidence																																				.	.	.	.	.
Query Sequence		V	P	G	T	A	A	P	V	A	L	T	F	L	N	A	A	G	T	K	T	G	K	V	F	P	T	D	N	Q	I	D	Y	F	D	.	.	.	.	.	D	V	P	V	T	C	I	D	M	A	M	P	V	V	I	I	P	A	E	Y	L	G	K	T	G	Y	E	L	P	A	E	L	D	A	D	K	A	L	L	A	R
Query Conservation																																				.	.	.	.	.
Alig confidence																	.	.	.	.																.	.	.	.	.
Template Conservation																	.	.	.	.
Template Sequence		V	T	F	P	A	A	E	V	Q	I	E	F	M	N	P	.	.	.	.	A	A	D	M	F	P	T	G	N	L	V	D	V	L	E	V	P	G	I	G	R	F	N	A	T	M	I	N	A	G	I	P	T	I	F	I	N	A	E	D	L	G	Y	T	G	T	E	L	Q	D	D	I	N	S	D	N	A	A	L	A	K
Template Known Secondary structure			S	S		B									S		.	.	.	.	B		.			T	T	S		S	S						T	T	T										B	S	S							G	G	G	G	T			S								T	T
Template Predicted Secondary structure																	.	.	.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.					.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.						.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.													.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	E	S	I	R	L	Q	A	G	K	A	M	G	L	G	D	.	.	.	.	.	V	S	N	M	V	I	P	K	P	V	L	I	S	P	A	Q	K	G	G	A	.	.	.	.	.	.	.	.	.	.	.	.	I	N	V	R	Y	F	M	P	H	S	C	H	R	A	L	A	I	T	G	A	I	A	I	S	S	S	C
Query Conservation																		.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	E	T	I	R	A	H	G	A	L	R	M	G	L	I	K	H	I	D	E	A	A	S	R	Q	H	T	P	K	I	A	F	V	A	P	P	K	S	Y	A	S	S	S	G	K	T	V	A	A	E	D	V	D	L	L	V	R	A	L	S	M	G	K	L	H	H	A	M	M	G	T	A	A	V	A	I	G	T	A	A
Template Known Secondary structure													T	T	S		S	S	G	G	G	G	G	G			S	S	S							S							T	T	S					G	G	G		S								T	T				S	S
Template Predicted Secondary structure
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.			.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure																																			.	.
Query SS confidence																																			.	.
Query Sequence		A	L	E	G	T	V	T	R	Q	I	V	P	S	V	G	Y	G	N	I	N	I	E	H	P	S	G	A	L	D	V	H	L	S	.	.	N	E	G	Q	D	A	T	T	L	R	A	S	V	I	R	T	T	R	K	I	F	S	G	E	V	Y	L	P
Query Conservation																																			.	.
Alig confidence																																			.	.
Template Conservation
Template Sequence		A	I	P	G	T	L	V	N	L	A	A	G	G	G	E	K	E	A	V	R	F	G	H	P	S	G	T	L	R	V	G	A	Q	A	V	Q	E	N	G	E	W	T	V	I	K	A	I	M	S	R	S	A	R	V	L	M	E	G	F	V	R	V	P
Template Known Secondary structure		T	S	T	T	S						T	T	S	S			S							T	T													T	T
Template Predicted Secondary structure
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions