Job Description P0AAV8 Confidence 98.45% Date Thu Jan 5 11:13:57 GMT 2012 Rank 7 Aligned Residues 224 % Identity 16% Template c2gkjA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:diaminopimelate epimerase; PDBTitle: crystal structure of diaminopimelate epimerase in complex2 with an irreversible inhibitor dl-azidap Resolution 1.70 Å

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		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	I	I	S	R	S	S	D	P	R	A	D	V	D	Y	L	F	A	Q	V	I	V	H	E	Q	R	V	D	T	T	P	N	C	G	N	M	L	S	G	V	G	A	F	A	I	E	N	G	L	I	A	A	T	S	P	V	T	R	V	R	I	R	N	V	N	T	G	T	F	I	E	A	D	V	Q	T	P	N	G
Query Conservation
Alig confidence																						.	.									.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.									.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	L	I	V	E	A	P	Y	D	P	E	L	D	F	H	Y	R	I	F	N	.	.	A	D	G	S	E	V	S	Q	.	.	.	C	G	N	G	A	R	C	F	A	R	F	V	T	L	K	G	L	T	N	K	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	I	S	V	S	T	Q	K	G
Template Known Secondary structure									S	S	T	T	S	S								.	.	T	T	S				S		.	.	.															T	T	S				S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S	S
Template Predicted Secondary structure																						.	.									.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.			.	.	.	.	.	70	.	.				.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.																		.	.	.	.	.	.	100	.	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.							.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.
Query Sequence		V	V	E	Y	E	G	S	A	R	I	D	G	V	P	G	T	A	A	P	V	A	L	T	F	L	N	A	A	G	.	.	.	.	.	.	T	K	T	G	K	V	F	P	T	D	N	Q	I	D	Y	F	D	D	V	P	V	T	C	I	D	M	A	M	P	V	V	I	I	P	A	E	Y	L	G	K	T	G	Y	E	L
Query Conservation																															.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.															.	.	.	.	.	.																																											.	.	.
Template Conservation									.	.	.	.	.	.	.	.																																																															.	.	.
Template Sequence		N	M	V	L	T	V	K	.	.	.	.	.	.	.	.	D	D	N	Q	I	R	V	N	M	G	E	P	I	W	E	P	A	K	I	P	F	T	A	N	K	F	E	K	N	Y	I	L	R	T	D	I	Q	T	V	L	C	G	A	V	S	M	G	N	P	H	C	V	V	Q	V	D	D	I	Q	T	A	N	.	.	.
Template Known Secondary structure									.	.	.	.	.	.	.	.	T	T	S										B			G	G	G	T	T				S	S			S	S						S	S										S	S	S								S		T	T	T	S		.	.	.
Template Predicted Secondary structure									.	.	.	.	.	.	.	.																																																															.	.	.
Template SS confidence
		103	.	.	.	.	.	.									110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	E	L	D	A	D	K	A	L	L	A	R	I	E	S	I	R	L	Q	A	G	K	A	M	G	L	G	D	V	S	N	M	V	I	P	K	P	V	L	I	S	P	A	Q	K	G	G	A	I	N	V	R	Y	F	M	P	H	S	C	H	R	A	L	A	I	T	G	A	I	A	I	S	S	S	C	A	L	E	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.											.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.											.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	Q	L	G	P	L	L	E	S	H	E	R	F	P	E	R	V	N	.	.	.	.	.	A	G	F	M	Q	I	I	N	K	E	.	H	I	K	L	R	V	Y	E	R	G	A	G	E	T	Q	A	C	G	S	G	A	C	A	A	V	A	V	G	I	M	Q	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.										T		T	T		T	T				.	.	.	.	.									T	T	.									T	T	T				S																T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.											.
Template SS confidence
															172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190						.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	T	R	Q	I	V	P	S	V	G	Y	G	N	I	N	I	E	H	P	S	G	A	L	D	V	H	L	S	N	E	G	Q	D	A	T	T	L	R	A	S	V	I	R	T	T	R	K	I	F	S	G	E	V	Y	L
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Template Sequence		L	L	.	.	.	.	.	.	.	.	.	N	N	N	V	Q	V	D	L	P	G	G	S	L	M	I	E	W	N	G	V	G	H	P	.	.	.	.	.	L	Y	M	T	G	E	A	T	H	I	Y	D	G	F	I	T	L
Template Known Secondary structure		S	S	.	.	.	.	.	.	.	.	.		S							T	T										T	T	S		.	.	.	.	.
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Template SS confidence
		233	.										.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.						.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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