Job Description P0AAV8 Confidence 95.60% Date Thu Jan 5 11:13:57 GMT 2012 Rank 15 Aligned Residues 266 % Identity 16% Template c1qy9B_ PDB info PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein ydde; PDBTitle: crystal structure of e. coli se-met protein ydde Resolution 2.05 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	T	S	R	G	A	F	L	L	A	E	H	L	P	E	D	Q	T	Q	R	D	K	I	L	M	A	I	M	G	S	G	N	D	L	E	I	D	G	I	G	G	G	N	P	L	T	S	K	V	A	I	I	S	R	S	S	D	P	R	A	D	V	D	Y	L	F	A	Q	V	I	V	H	E	Q	R	V	D	T	T
Query Conservation
Alig confidence																	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.								.	.
Template Conservation																	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.								.	.
Template Sequence		R	G	N	S	A	G	V	V	F	P	A	D	N	L	S	.	.	.	E	A	Q	X	Q	L	I	A	R	E	L	G	H	S	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	A	F	L	L	H	S	D	D	S	D	V	R	I	R	Y	F	.	.	.	.	.	T	P	T	V	E	V	P	.	.
Template Known Secondary structure			S										T	T			.	.	.														S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								S	S	S	S							.	.	.	.	.		S	S	S			S	.	.
Template Predicted Secondary structure																	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.								.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.				.	.	.	.	.	.	.	.	40	.	.	.	.	.	.																	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.						.	.	.	.	.	.	70
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		P	N	C	G	N	M	L	S	G	V	G	A	F	A	I	E	N	G	L	I	A	A	T	S	P	V	T	R	V	R	I	R	N	V	N	T	G	T	F	I	E	A	D	V	Q	T	P	N	G	V	V	E	Y	E	G	S	A	R	I	D	G	V	P	G	T	A	A	P	V	A	L	T	F	L	N	A	A	G	T	K
Query Conservation
Alig confidence		.																								.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.																								.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	I	C	G	H	A	T	V	A	A	H	Y	V	R	A	K	V	L	G	L	G	N	C	T	.	.	.	.	.	.	I	W	Q	T	S	L	A	G	K	H	R	V	T	I	E	K	H	N	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Y	R	I	S	L	E	Q	G	T	P	G	F
Template Known Secondary structure		.																		T			S			.	.	.	.	.	.						T	T											T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.																								.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.							.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.																			.	.	.	.	.	.	.	120	.	.	.	.	.
		171	.	.	.	.	.											.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.
Query Sequence		T	G	K	V	F	P	.	.	.	.	.	.	.	.	.	.	T	D	N	Q	I	D	Y	F	D	D	V	P	V	T	C	I	D	M	A	M	P	V	V	I	I	P	A	E	Y	L	G	K	T	G	Y	E	L	P	A	E	L	D	A	D	K	A	L	L	A	R	I	E	S	I	R	L	Q	A	G	K	A	M	G	L
Query Conservation								.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	P	P	L	E	G	E	T	R	A	A	I	I	N	A	L	H	L	T	E	D	D	I	L	P	G	L	P	I	Q	V	A	T	T	G	H	S	K	V	X	I	P	L	K	P	.	.	.	.	.	E	V	D	I	D	A	L	S	P	D	L	N	A	L	T	A	I	S	K	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																	T	T			G	G	G	B		T	T								S	S	S							B		T	.	.	.	.	.	T	S		G	G	G														.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																															.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170						.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.				.	.	.	.	.
Predicted Secondary structure																																																																										.	.	.
Query SS confidence																																																																										.	.	.
Query Sequence		G	D	V	S	N	M	V	I	P	K	P	V	L	I	S	P	A	Q	K	G	G	A	I	N	V	R	Y	F	M	P	H	S	C	H	R	A	L	A	I	T	G	A	I	A	I	S	S	S	C	A	L	E	G	T	V	T	R	Q	I	V	P	S	V	G	Y	G	N	I	N	I	E	H	.	.	.	P	S	G	A	L
Query Conservation																																																																										.	.	.
Alig confidence		.	.	.	.																																																																					.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	K	I	G	C	N	G	F	F	P	F	Q	I	R	P	G	K	N	E	T	D	G	R	X	F	S	P	A	I	G	I	V	E	D	P	V	T	G	N	A	N	G	P	X	G	A	W	L	V	H	H	N	V	L	P	H	D	G	N	V	L	R	V	K	G	H	Q	G	R	A	L	G	R	D	G	X	I
Template Known Secondary structure		.	.	.	.			T											T	T	S	S									G	G	G	T					S	S															T	T		S			S	T	T										T	T	T	T
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	H	L	S	N	E	G	Q	D	A	T	T	L	R	A	S	V	I	R	T	T	R	K	I	F	S	G	E	V	Y	L
Query Conservation
Alig confidence												.	.
Template Conservation												.	.
Template Sequence		E	V	T	V	T	I	R	D	N	Q	.	.	P	E	K	V	T	I	S	G	T	A	V	I	L	F	H	A	E	W	A	I
Template Known Secondary structure									T	T		.	.																			S	S
Template Predicted Secondary structure												.	.
Template SS confidence
		266	.	.	.	270	.	.	.	.	.			.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions