Job Description P0A7V8 Confidence 100.00% Date Wed Jan 25 15:20:18 GMT 2012 Rank 2 Aligned Residues 205 % Identity 48% Template d2uubd1 SCOP info Alpha-L RNA-binding motif Alpha-L RNA-binding motif Ribosomal protein S4 Resolution 2.9

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30			.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.																	.
Query SS confidence																															.	.																	.
Query Sequence		A	R	Y	L	G	P	K	L	K	L	S	R	R	E	G	T	D	L	F	L	K	S	G	V	R	A	I	D	T	.	.	K	C	K	I	E	Q	A	P	G	Q	H	G	A	R	K	P	.	R	L	S	D	Y	G	V	Q	L	R	E	K	Q	K	V	R	R	I	Y	G	V	L	E	R	Q	F	R	N	Y	Y	K	E
Query Conservation																															.	.																	.
Alig confidence																															.	.																	.
Template Conservation
Template Sequence		G	R	Y	I	G	P	V	C	R	L	C	R	R	E	G	V	K	L	Y	L	K	G	E	R	C	Y	S	P	K	C	A	M	E	R	R	P	Y	P	P	G	Q	H	G	Q	K	R	A	R	R	P	S	D	Y	A	V	R	L	R	E	K	Q	K	L	R	R	I	Y	G	I	S	E	R	Q	F	R	N	L	F	E	E
Template Known Secondary structure						S										T	S				S	S	S	T	T	S	S	S	T	T	S	S	S	S	S			S		S	S	T	T	S	S	S																							T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	R	L	K	G	N	T	G	E	N	L	L	A	L	L	E	G	R	L	D	N	V	V	Y	R	M	G	F	G	A	T	R	A	E	A	R	Q	L	V	S	H	K	A	I	M	V	N	G	R	V	V	N	I	A	S	Y	Q	V	S	P	N	D	V	V	S	I	R	E	K	A	K	K	Q	S	R	V	K	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	S	K	K	K	G	V	T	G	S	V	F	L	G	L	L	E	S	R	L	D	N	V	V	Y	R	L	G	F	A	V	S	R	R	Q	A	R	Q	L	V	R	H	G	H	I	T	V	N	G	R	R	V	D	L	P	S	Y	R	V	R	P	G	D	E	I	A	V	A	E	K	S	R	N	L	E	L	I	R	Q	N
Template Known Secondary structure					S	S	S												T	B								T	T	S	S	S	S										T	T					T	T						T	T		B			T	T							G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	L	A	E	Q	R	E	K	P	T	W	L	E	V	D	A	G	K	M	E	G	T	F	K	R	K	P	E	R	S	D	L	S	A	D	I	N	E	H	L	I	V	E	L	Y	S	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	E	A	M	K	G	R	K	V	G	P	W	L	S	L	D	V	E	G	M	K	G	K	F	L	R	L	P	D	R	E	D	L	A	L	P	V	N	E	Q	L	V	I	E	F	Y	S	R
Template Known Secondary structure						T	T					T	T					T	T	T	T						S				G	G	G				S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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