Job Description P0A7V8 Confidence 100.00% Date Wed Jan 25 15:20:18 GMT 2012 Rank 3 Aligned Residues 199 % Identity 38% Template c3bbnD_ PDB info PDB header:ribosome Chain: D: PDB Molecule:ribosomal protein s4; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. Resolution 9.40 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	R	Y	L	G	P	K	L	K	L	S	R	R	E	G	T	D	L	F	L	K	S	G	V	R	A	I	D	T	K	C	K	I	E	Q	A	P	G	Q	H	G	A	R	K	P	R	L	S	D	Y	G	V	Q	L	R	E	K	Q	K	V	R	R	I	Y	G	V	L	E	R	Q	F	R	N	Y	Y	K	E	A	A
Query Conservation
Alig confidence																										.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.
Template Sequence		M	S	R	Y	R	G	P	R	F	K	K	I	R	R	L	G	A	L	P	G	L	T	N	K	.	.	.	.	.	.	.	R	P	R	A	G	S	D	L	R	N	Q	S	R	S	G	K	R	S	Q	Y	R	I	R	L	E	E	K	Q	K	L	R	F	H	Y	G	I	T	E	R	Q	L	L	K	Y	V	R	I	A	R
Template Known Secondary structure				S			S			T	T	S	S	S	S	S	S	S				S	S	S		.	.	.	.	.	.	.			S			S	S	S		S	S	S							T	T					T	T									T
Template Predicted Secondary structure																										.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.								.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	K	G	N	T	G	E	N	L	L	A	L	L	E	G	R	L	D	N	V	V	Y	R	M	G	F	G	A	T	R	A	E	A	R	Q	L	V	S	H	K	A	I	M	V	N	G	R	V	V	N	I	A	S	Y	Q	V	S	P	N	D	V	V	S	I	R	E	K	A	K	K	Q	S	R	V	K	A	A	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	A	K	G	S	T	G	Q	V	L	L	Q	L	L	E	M	R	L	D	N	I	L	F	R	L	G	M	A	P	T	I	P	G	A	R	Q	L	V	N	H	R	H	I	L	V	N	G	R	I	V	D	I	P	S	Y	R	C	K	P	Q	D	T	I	M	A	R	D	E	Q	K	S	I	A	L	I	Q	N	S	L	D
Template Known Secondary structure			S	S	S		T	T	T	T	T	T					S	B	T	T	T	T	T	T	T	T	T	S	S	S	S	S									T	T					T	T						T	T		B			T	T							S	S	T	T	S								S	S
Template Predicted Secondary structure
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	E	Q	R	E	K	P	T	W	L	E	V	D	A	G	K	M	E	G	T	F	K	R	K	P	E	R	S	D	L	S	A	D	I	N	E	H	L	I	V	E	L	Y	S	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	S	P	R	E	E	L	P	K	H	L	T	L	N	P	F	P	Y	K	G	L	V	N	Q	I	I	D	S	K	W	V	G	L	K	I	N	E	L	L	V	V	E	Y	Y	S	R
Template Known Secondary structure		S	T	T	T	S				T	T					T	T	T	T						S				G	G	G				S							T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions