Job Description P0A7V8 Confidence 99.80% Date Wed Jan 25 15:20:18 GMT 2012 Rank 5 Aligned Residues 117 % Identity 26% Template c2xzmD_ PDB info PDB header:ribosome Chain: D: PDB Molecule:ribosomal protein s4 containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 Resolution 3.93 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.									.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.										.	.	.	.	.	90	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.								.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.								.	.	.	.	.
Query Sequence		I	E	Q	A	P	G	Q	H	G	A	R	K	P	R	L	S	D	Y	G	V	Q	L	R	E	K	Q	K	V	R	R	I	Y	G	V	.	.	.	.	.	.	.	.	L	E	R	Q	F	R	N	Y	Y	K	E	A	A	R	L	K	G	.	.	.	.	.	.	.	.	.	N	T	G	E	N	L	L	.	.	.	.	.
Query Conservation																																				.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.								.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.								.	.	.	.	.
Template Conservation
Template Sequence		K	T	Y	I	N	T	S	K	T	Y	S	T	P	R	R	P	Y	E	K	E	R	L	D	N	E	M	K	L	I	G	T	F	G	L	K	N	K	R	E	V	W	R	V	Q	M	I	L	A	K	F	R	K	A	A	R	E	L	L	T	L	D	P	K	D	P	R	R	L	F	E	G	S	A	L	L	R	R	M	F	K
Template Known Secondary structure					S										S	S	T	T															T	T			S																							T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
																						92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140			.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	L	E	G	R	L	D	N	V	V	Y	R	M	G	F	G	A	T	R	A	E	A	R	Q	L	V	S	H	K	A	I	M	V	N	G	R	V	V	N	I	A	S	Y	Q	V	S	P	N	.	.	D	V	V	S	I	R	E	K	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.
Template Conservation
Template Sequence		Y	G	L	L	S	E	Q	E	R	K	L	D	Y	V	L	G	L	T	I	H	K	L	M	E	R	R	L	Q	T	R	V	F	K	L	N	L	A	N	S	I	H	H	S	R	V	L	I	R	Q	R	H	I	K	V	G	K	N	L	V	N	V	P	S	F	M	V	R	T	D	S	E	K	S	I	D	F	A	S	T	S
Template Known Secondary structure		T	T	S	S		T	T			S	T					S								T	T	B								T	T		S	S	S	T	T						T	T	T	T					T	T						S			B			S	T	T	S	S					T	T	S	T
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		150
Predicted Secondary structure
Query SS confidence
Query Sequence		K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		163

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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