Job Description P16429 Confidence 100.00% Date Thu Jan 5 11:35:05 GMT 2012 Rank 3 Aligned Residues 456 % Identity 18% Template c3rkoN_ PDB info PDB header:oxidoreductase Chain: N: PDB Molecule:nadh-quinone oxidoreductase subunit n; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Resolution 3.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	A	I	S	L	I	N	S	G	V	A	W	F	V	A	A	A	V	L	A	F	L	F	S	F	Q	K	A	L	S	G	W	I	A	G	I	G	G	A	V	G	S	L	Y	T	A	A	A	G	F	T	V	L	T	G	A	V	G	V	S	G	A	L	S	L	V	S	Y	D	V	Q	I	S	P	L	N	A	I	W
Query Conservation
Alig confidence																																																																		.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.
Template Sequence		I	T	P	Q	N	L	I	A	L	L	P	L	L	I	V	G	L	T	V	V	V	V	M	L	S	I	A	W	R	R	N	H	F	L	N	A	T	L	S	V	I	G	L	N	A	A	L	V	S	L	W	F	V	G	Q	A	G	A	M	D	V	T	P	L	.	.	.	.	.	.	M	R	V	D	G	F	A	M	L	Y
Template Known Secondary structure									T	T																				T																											S						S	T	T	.	.	.	.	.	.	B			S
Template Predicted Secondary structure																																																																		.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.							.	.	.	70	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100			.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.								.	.	.	.	150	.
Predicted Secondary structure																						.	.																																														.	.	.	.	.	.	.
Query SS confidence																						.	.																																														.	.	.	.	.	.	.
Query Sequence		L	I	T	L	G	L	C	G	L	F	V	S	L	Y	N	I	D	W	H	R	.	.	H	A	Q	V	K	C	N	G	L	Q	I	N	M	L	M	A	A	A	V	C	A	V	I	A	S	N	L	G	M	F	V	V	M	A	E	I	M	A	L	C	A	V	F	L	T	.	.	.	.	.	.	.	S	N	S	K	E	G
Query Conservation																						.	.																																														.	.	.	.	.	.	.
Alig confidence																						.	.																																														.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	G	L	V	L	L	A	S	L	A	T	C	T	F	A	Y	P	W	L	E	G	Y	N	D	N	K	D	E	F	Y	L	L	V	L	I	A	A	L	G	G	I	L	L	A	N	A	N	H	L	A	S	L	F	L	G	I	E	L	I	S	L	P	L	F	G	L	V	G	Y	A	F	R	Q	K	R	S	L	E	A	S
Template Known Secondary structure																								S	S																					T	B		S	S										T	T									T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	W	F	A	L	G	R	L	G	T	L	L	L	A	I	A	C	W	L	L	W	Q	R	Y	G	T	L	D	L	R	L	L	D	M	R	M	Q	Q	L	P	L	G	S	D	I	W	L	L	G	V	I	G	F	G	L	L	A	G	I	I	P	L	H	G	W	V	P	Q	A	H	A	N	A	S	A	P	A	A	A
Query Conservation
Alig confidence																																			.	.	.
Template Conservation																																			.	.	.
Template Sequence		I	K	Y	T	I	L	S	A	A	A	S	S	F	L	L	F	G	M	A	L	V	Y	A	Q	S	G	D	L	S	F	V	A	L	.	.	.	G	K	N	E	P	L	L	L	A	G	F	G	L	M	I	V	G	L	G	F	K	L	S	L	V	P	F	H	L	W	T	P	D	V	Y	Q	G	A	P	A	P	V	S	T
Template Known Secondary structure																										S	S			S	S	S		S	.	.	.																							T		T	T	S		T									S
Template Predicted Secondary structure																																			.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.				190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		L	F	S	T	V	V	M	K	I	G	L	L	G	I	L	T	L	S	L	.	L	G	G	N	A	P	L	W	W	G	I	A	L	L	V	L	G	M	I	T	A	F	V	G	G	L	Y	A	L	V	E	H	N	I	Q	R	L	L	A	Y	H	T	L	E	N	I	G	I	I	L	L	G	L	G	A	G	V	T	G	I
Query Conservation																					.
Alig confidence																					.																																																									.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		F	L	A	T	A	S	K	I	A	I	F	G	V	V	M	R	L	F	L	Y	A	P	V	G	D	S	E	A	I	R	V	V	L	A	I	I	A	F	A	S	I	I	F	G	N	L	M	A	L	S	Q	T	N	I	K	R	L	L	G	Y	S	S	I	S	H	L	G	Y	L	L	V	A	L	I	A	L	.	.	.	.
Template Known Secondary structure					T																		G	G	G	G		S																							T			B																						T	S	.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.				350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.
Query SS confidence																																									.	.	.
Query Sequence		A	L	E	Q	P	A	L	I	A	L	G	L	V	G	G	L	Y	H	L	L	N	H	S	L	F	K	S	V	L	F	L	G	A	G	S	V	W	F	R	.	.	.	T	G	H	R	D	I	E	K	L	G	G	I	G	K	K	M	P	V	I	S	I	A	M	L	V	G	L	M	A	M	A	A	L	P	P	L	N	G
Query Conservation																																									.	.	.
Alig confidence		.	.	.	.	.																																			.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	Q	T	G	E	M	S	M	E	A	V	G	V	Y	L	A	G	Y	L	F	S	S	L	G	A	F	G	V	V	S	L	M	S	S	P	Y	R	G	P	D	A	D	S	L	F	S	Y	R	G	L	F	W	H	R	P	I	L	A	A	V	M	T	V	M	M	L	S	L	A	G	I	P	M	T	L	G
Template Known Secondary structure		.	.	.	.	.	S	S		S																														S			S	S				B	G	G	G		S	S		T	T	T	S														T	T	T		T	T	S
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	G	E	W	V	I	Y	Q	S	F	F	K	L	S	N	S	G	A	F	V	A	R	L	L	G	P	L	L	A	V	G	L	A	I	T	G	A	L	A	V	M	C	M	A	K	V	Y	G	V	T	F	L	G	A	P	R	T	K	E	A	E	N	A	T	C	A	P	L	L	M	S	V	S	V	V	A	L	A	I
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Template Sequence		F	I	G	K	F	Y	V	L	A	V	G	V	Q	A	H	L	.	.	.	.	.	.	.	.	.	.	W	W	L	V	G	A	V	V	V	G	S	A	I	G	L	Y	Y	Y	L	R	V	A	V	S	L	Y	L	H	A	P	E	.	.	.	.	Q	P	S	N	W	Q	Y	S	A	G	G	I	V	V	L	I	S	A	L
Template Known Secondary structure															T	T		.	.	.	.	.	.	.	.	.	.																											S					.	.	.	.				S	T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.											.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.					.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
		468	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	C	V	I	G	G	V	A	A	P	W	L	L	P	M	L	S	A	A	V	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	L	V	L	G	V	W	P	Q	P	L	I	S	I	V	R	L	A	M	P
Template Known Secondary structure																			T
Template Predicted Secondary structure
Template SS confidence
		463	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.