Job Description P16429 Confidence 100.00% Date Thu Jan 5 11:35:05 GMT 2012 Rank 2 Aligned Residues 461 % Identity 21% Template c3rkoM_ PDB info PDB header:oxidoreductase Chain: M: PDB Molecule:nadh-quinone oxidoreductase subunit m; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Resolution 3.00 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.														.	.	.	70	.
Predicted Secondary structure																								.																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	I	N	S	G	V	A	W	F	V	A	A	A	V	L	A	F	L	F	S	F	Q	.	K	A	L	S	G	W	I	A	G	I	G	G	A	V	G	S	L	Y	T	A	A	A	G	F	T	V	L	T	G	A	V	G	V	S	G	A	L	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	V	S	Y	D	V
Query Conservation																								.																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	L	P	W	L	I	L	I	P	F	I	G	G	F	L	C	W	Q	T	E	R	F	G	V	K	V	P	R	W	I	A	L	I	T	M	G	L	T	L	A	L	S	L	Q	L	W	L	Q	G	G	Y	S	L	T	Q	S	A	G	I	P	Q	W	Q	S	E	F	D	M	P	W	I	P	R	F	G	I	S	I	H	L
Template Known Secondary structure																			T	T	G	G	G		T	T																								S		S	S			S		S		S	S			S									G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		Q	I	S	P	L	N	A	I	W	L	I	T	L	G	L	C	G	L	F	V	S	L	Y	N	I	D	W	H	R	H	A	Q	V	K	C	N	G	L	Q	I	N	M	L	M	A	A	A	V	C	A	V	I	A	S	N	L	G	M	F	V	V	M	A	E	I	M	A	L	C	A	V	F	L	T	S	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence																																		.																																											.	.	.	.	.
Template Conservation																																		.
Template Sequence		A	I	D	G	L	S	L	L	M	V	V	L	T	G	L	L	G	V	L	A	V	L	C	S	W	K	E	I	E	K	Y	Q	.	G	F	F	H	L	N	L	M	W	I	L	G	G	V	I	G	V	F	L	A	I	D	M	F	L	F	F	F	F	W	E	M	M	L	V	P	M	Y	F	L	I	A	L	W	G	H	K
Template Known Secondary structure																								T	T	T	T			S	S			.																				B		B
Template Predicted Secondary structure																																		.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
								147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.							180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																																		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																																		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	N	S	K	E	G	K	L	W	F	A	L	G	R	L	G	T	L	L	L	A	I	A	C	W	L	L	W	Q	R	Y	G	T	L	.	.	.	.	.	.	D	L	R	L	L	D	M	R	M	Q	Q	L	P	L	G	S	D	I	W	L	L	G	V	I	G	F	G	L	L	A	G	I	I	P	L
Query Conservation		.	.	.	.	.	.																																		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																																		.	.	.	.	.	.
Template Conservation
Template Sequence		A	S	D	G	K	T	R	I	T	A	A	T	K	F	F	I	Y	T	Q	A	S	G	L	V	M	L	I	A	I	L	A	L	V	F	V	H	Y	N	A	T	G	V	W	T	F	N	Y	E	E	L	L	N	T	P	M	S	S	G	V	E	Y	L	L	M	L	G	F	F	I	A	F	A	V	K	M	P	V	V	P	L
Template Known Secondary structure			S	S																																			T	T	T	S					B											T	T																	T	T		S	S	T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		H	G	W	V	P	Q	A	H	A	N	A	S	A	P	A	A	A	L	F	S	T	V	V	M	K	I	G	L	L	G	I	L	T	L	S	L	.	L	G	G	N	A	P	L	W	W	G	I	A	L	L	V	L	G	M	I	T	A	F	V	G	G	L	Y	A	L	V	E	H	N	I	Q	R	L	L	A	Y	H	T	L
Query Conservation																																						.
Alig confidence																																						.
Template Conservation
Template Sequence		H	G	W	L	P	D	A	H	S	Q	A	P	T	A	G	S	V	D	L	A	G	I	L	L	K	T	A	A	Y	G	L	L	R	F	S	L	P	L	F	P	N	A	S	A	E	F	A	P	I	A	M	W	L	G	V	I	G	I	F	Y	G	A	W	M	A	F	A	Q	T	D	I	K	R	L	I	A	Y	T	S	V
Template Known Secondary structure		T	T									S											T														T	T	T	S																												T		S	B
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	I	G	I	I	L	L	G	L	G	A	G	V	T	G	I	A	L	E	Q	P	A	L	I	A	L	G	L	V	G	G	L	Y	H	L	L	N	H	S	L	F	K	S	V	L	F	L	G	A	G	S	V	W	F	R	T	G	H	R	D	I	E	K	L	G	G	I	G	K	K	M	P	V	I	S	I	A	M	L
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	H	M	G	F	V	L	I	A	I	Y	T	G	.	.	.	.	.	.	.	.	.	.	.	S	Q	L	A	Y	Q	G	A	V	I	Q	M	I	A	H	G	L	S	A	A	G	L	F	I	L	C	G	Q	L	Y	E	R	I	H	T	R	D	M	R	M	M	G	G	L	W	S	K	M	K	W	L	P	A	L	S	L
Template Known Secondary structure												T	S		.	.	.	.	.	.	.	.	.	.	.																																					B	G	G	G			S	G	G	G	T		S	S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.												.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.		.	450	.	.
Predicted Secondary structure																																																																													.
Query SS confidence																																																																													.
Query Sequence		V	G	L	M	A	M	A	A	L	P	P	L	N	G	F	A	G	E	W	V	I	Y	Q	S	F	F	K	L	S	N	S	G	A	F	V	A	R	L	L	G	P	L	L	A	V	G	L	A	I	T	G	A	L	A	V	M	C	M	A	K	V	Y	G	V	T	F	L	G	A	P	R	T	K	E	A	.	E	N	A	T
Query Conservation																																																																													.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.																																				.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	F	A	V	A	T	L	G	M	P	G	T	G	N	F	V	G	E	F	M	I	L	F	G	S	F	Q	V	V	.	.	.	.	.	.	.	.	.	.	.	P	V	I	T	V	I	S	T	F	G	L	V	F	A	S	V	Y	S	L	A	M	L	H	R	A	Y	F	G	K	A	K	S	Q	I	A	S	Q	E	L	P
Template Known Secondary structure								S			T	T	S																		.	.	.	.	.	.	.	.	.	.	.																											S	S	S	S		S	S	T	T		S	S
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.												.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
		453	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	A	P	L	L	M	S	V	S	V	V	A	L	A	I	C	C	V	I	G	G	V	A	A	P	W	L	L	P	M	L	S	A	A	V	P	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	M	S	L	R	E	L	F	M	I	L	L	L	V	V	L	L	V	L	L	G	F	Y	P	Q	P	I	L	D	T	S	H	S	A	I	G	N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		459	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.