Job Description P16429 Confidence 100.00% Date Thu Jan 5 11:35:05 GMT 2012 Rank 1 Aligned Residues 546 % Identity 21% Template c3rkoL_ PDB info PDB header:oxidoreductase Chain: L: PDB Molecule:nadh-quinone oxidoreductase subunit l; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Resolution 3.00 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.										.	.	.	70	.	.
Predicted Secondary structure																									.	.																																									.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.																																									.	.	.	.	.	.	.	.	.
Query Sequence		I	S	L	I	N	S	G	V	A	W	F	V	A	A	A	V	L	A	F	L	F	S	F	.	.	Q	K	A	L	S	G	W	I	A	G	I	G	G	A	V	G	S	L	Y	T	A	A	A	G	F	T	V	L	T	G	A	V	G	V	S	G	A	L	S	L	.	.	.	.	.	.	.	.	.	V	S	Y	D	V	Q
Query Conservation																									.	.																																									.	.	.	.	.	.	.	.	.
Alig confidence																									.	.																																									.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	N	M	L	A	L	T	I	I	L	P	L	I	G	F	V	L	L	A	F	S	R	G	R	W	S	E	N	V	S	A	I	V	G	V	G	S	V	G	L	A	A	L	V	T	A	F	I	G	V	D	F	F	A	N	G	E	Q	T	Y	S	Q	P	L	W	T	W	M	S	V	G	D	F	N	I	G	F	N	L	V
Template Known Secondary structure					T	T																		S		S																														T	T	S														S	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																																		.																																										.	.	.	.	.	.
Query SS confidence																																		.																																										.	.	.	.	.	.
Query Sequence		I	S	P	L	N	A	I	W	L	I	T	L	G	L	C	G	L	F	V	S	L	Y	N	I	D	W	H	R	H	A	Q	V	.	K	C	N	G	L	Q	I	N	M	L	M	A	A	A	V	C	A	V	I	A	S	N	L	G	M	F	V	V	M	A	E	I	M	A	L	C	A	V	F	L	T	.	.	.	.	.	.
Query Conservation																																		.																																										.	.	.	.	.	.
Alig confidence																																		.																																										.	.	.	.	.	.
Template Conservation
Template Sequence		L	D	G	L	S	L	T	M	L	S	V	V	T	G	V	G	F	L	I	H	M	Y	A	S	W	Y	M	R	G	E	E	G	Y	S	R	F	F	A	Y	T	N	L	F	I	A	S	M	V	V	L	V	L	A	D	N	L	L	L	M	Y	L	G	W	E	G	V	G	L	C	S	Y	L	L	I	G	F	Y	Y	T	D
Template Known Secondary structure																												T	S	S		S																					T	B	S	B	S																			T	T	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
			146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.						.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.																																								.	.	.	.	.
Query SS confidence		.																																								.	.	.	.	.
Query Sequence		.	S	N	S	K	E	G	K	L	W	F	A	L	G	R	L	G	T	L	L	L	A	I	A	C	W	L	L	W	Q	R	Y	G	T	L	D	L	R	L	L	.	.	.	.	.	D	M	R	M	Q	Q	L	P	L	G	S	D	I	W	L	L	G	V	I	G	F	G	L	L	A	G	I	I	P	L	H	G	W	V	P
Query Conservation		.																																								.	.	.	.	.
Alig confidence		.																																								.	.	.	.	.
Template Conservation
Template Sequence		P	K	N	G	A	A	A	M	K	A	F	V	V	T	R	V	G	D	V	F	L	A	F	A	L	F	I	L	Y	N	E	L	G	T	L	N	F	R	E	M	V	E	L	A	P	A	H	F	A	D	G	N	N	M	L	M	W	A	T	L	M	L	L	G	G	A	V	G	K	S	A	Q	L	P	L	Q	T	W	L	A
Template Known Secondary structure																																	T	S			B													T	T		S	S	S																	T		T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	H	A	N	A	S	A	P	A	A	A	L	F	S	T	V	V	M	K	I	G	L	L	G	I	L	T	L	S	L	L	G	G	N	A	P	L	W	W	G	I	A	L	L	V	L	G	M	I	T	A	F	V	G	G	L	Y	A	L	V	E	H	N	I	Q	R	L	L	A	Y	H	T	L	E	N	I	G	I	I
Query Conservation
Alig confidence																																										.
Template Conservation																																										.
Template Sequence		D	A	M	A	G	P	T	P	V	S	A	L	I	H	A	A	T	M	V	T	A	G	V	Y	L	I	A	R	T	H	G	L	F	L	M	T	P	E	V	L	.	H	L	V	G	I	V	G	A	V	T	L	L	L	A	G	F	A	A	L	V	Q	T	D	I	K	R	V	L	A	Y	S	T	M	S	Q	I	G	Y	M
Template Known Secondary structure				T	T	S											T	T												T						T	S					.																			T	T		S	B
Template Predicted Secondary structure																																										.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.
Query SS confidence																																																				.
Query Sequence		L	L	G	L	G	A	G	V	T	G	I	A	L	E	Q	P	A	L	I	A	L	G	L	V	G	G	L	Y	H	L	L	N	H	S	L	F	K	S	V	L	F	L	G	A	G	S	V	W	F	R	.	T	G	H	R	D	I	E	K	L	G	G	I	G	K	K	M	P	V	I	S	I	A	M	L	V	G	L	M	A
Query Conservation																																																				.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	L	A	L	G	V	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	W	D	A	A	I	F	H	L	M	T	H	A	F	F	K	A	L	L	F	L	A	S	G	S	V	I	L	A	C	H	H	E	Q	N	I	F	K	M	G	G	L	R	K	S	I	P	L	V	Y	L	C	F	L	V	G	G	A	A
Template Known Secondary structure							T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														T	T	S			B	S	T	T					T	T	T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		320	.	.	.	.	.	.															.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
		379	380	.	.	.	.	.	.		.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		M	A	A	L	P	P	L	N	.	G	F	A	G	E	W	V	I	Y	Q	S	F	F	K	L	S	N	S	G	A	F	V	A	R	L	L	G	P	L	L	A	V	G	L	A	I	T	G	A	L	A	V	M	C	M	A	K	V	Y	G	V	T	F	L	G	A	P	R	T	K	E	A	E	N	A	T	C	A	P	L	L
Query Conservation										.
Alig confidence										.																		.	.	.	.	.	.	.	.	.	.																																				.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.																																				.	.	.
Template Sequence		L	S	A	L	P	L	V	T	A	G	F	F	S	K	D	E	I	L	A	G	A	M	A	N	G	H	.	.	.	.	.	.	.	.	.	.	I	N	L	M	V	A	G	L	V	G	A	F	M	T	S	L	Y	T	F	R	M	I	F	I	V	F	H	G	K	E	Q	I	H	A	H	.	.	.	A	V	K	G	V	T
Template Known Secondary structure				T		S	S	S	B															T	T	T		.	.	.	.	.	.	.	.	.	.																											S	S				S				.	.	.
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.																																				.	.	.
Template SS confidence
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.											.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.				.	.	.	450	.	.
		458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	V	S	V	V	A	L	A	I	C	C	V	I	G	G	V	A	A	P	W	L	L	P	M	L	S	A	A	V	P	L	P	L	E	P	A	N	T	T	V	S	Q	P	M	I	T	L	L	L	I	A	C	P	L	L	P	F	I	I	M	A	I	C	K	G	D	R	L	P	S	R	S	R	G	A	A	W	V	C
Query Conservation
Alig confidence																								.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.
Template Sequence		H	S	L	P	L	I	V	L	L	I	L	S	T	F	V	G	A	L	I	V	P	P	.	.	.	.	.	.	.	L	Q	G	V	L	P	Q	T	T	E	L	A	H	G	S	M	L	T	L	E	I	T	S	G	V	V	A	V	V	G	I	L	L	A	A	W	L	W	L	G	K	R	T	L	V	T	S	I	A	N	S
Template Known Secondary structure														B	T	T	G	G	G					.	.	.	.	.	.	.	T	T	T	T										S																									S	S											S
Template Predicted Secondary structure																								.	.	.	.	.	.	.
Template SS confidence
		453	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.								.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.
		538	.		540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		G	Y	.	D	H	E	K	S	M	V	I	T	A	H	G	F	A	M	P	V	K	Q	A	F	A	P	V	L	K	L	R	K	W	L	N	P	V	S	L	V	P	G	W	Q	C	E	G	S	A	L	L	F	R	R	M	A
Query Conservation				.
Alig confidence				.																															.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.
Template Sequence		A	P	G	R	L	L	S	T	W	W	Y	N	A	W	G	F	D	W	L	Y	D	K	V	F	V	K	P	F	L	G	I	A	W	.	.	.	.	.	.	.	.	L	L	K	R	D	P	L	N	S	M	M	N	I	P	A
Template Known Secondary structure													T	G	G	G									T										.	.	.	.	.	.	.	.		T	S	S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.
Template SS confidence
		526	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.									.	560	.	.	.	.	.	.	.	.	.	570	.	.	.