Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	I	V	T	A	A	V	M	A	S	T	L	A	V	S	S	L	S	H	A	A	E	V	G	S	G	D	N	W	H	P	G	E	E	L	T	Q	R	S	T	Q	S	H	M	F	D	G	I	S	L	T	E	H	Q	R	Q	Q	M	R
Secondary structure
SS confidence
Disorder		?	?																		?	?	?			?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	L	M	Q	Q	A	R	H	E	Q	P	P	V	N	V	S	E	L	E	T	M	H	R	L	V	T	A	E	N	F	D	E	N	A	V	R	A	Q	A	E	K	M	A	N	E	Q	I	A	R	Q	V	E	M	A	K	V	R	N	Q	M
Secondary structure
SS confidence
Disorder																											?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Sequence		Y	R	L	L	T	P	E	Q	Q	A	V	L	N	E	K	H	Q	Q	R	M	E	Q	L	R	D	V	T	Q	W	Q	K	S	S	S	L	K	L	L	S	S	S	N	S	R	S	Q
Secondary structure
SS confidence
Disorder																															?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3itf chain A Region: 43 - 150 Aligned: 108 Modelled: 106 Confidence: 99.9% Identity: 93% PDB header:signaling protein Chain: A: PDB Molecule:periplasmic adaptor protein cpxp; PDBTitle: structural basis for the inhibitory function of the cpxp adaptor2 protein Phyre2 PDB 3qzc chain A Region: 44 - 151 Aligned: 108 Modelled: 108 Confidence: 99.9% Identity: 100% PDB header:signaling protein Chain: A: PDB Molecule:periplasmic protein cpxp; PDBTitle: structure of the periplasmic stress response protein cpxp Phyre2 PDB 3o39 chain A Region: 46 - 140 Aligned: 95 Modelled: 95 Confidence: 99.8% Identity: 26% PDB header:chaperone Chain: A: PDB Molecule:periplasmic protein related to spheroblast formation; PDBTitle: crystal structure of spy Phyre2 PDB 3epv chain B Region: 42 - 143 Aligned: 102 Modelled: 102 Confidence: 99.7% Identity: 8% PDB header:metal binding protein Chain: B: PDB Molecule:nickel and cobalt resistance protein cnrr; PDBTitle: x-ray structure of the metal-sensor cnrx in both the apo- and copper-2 bound forms Phyre2 PDB 3oeo chain D Region: 47 - 137 Aligned: 91 Modelled: 91 Confidence: 99.7% Identity: 30% PDB header:signaling protein Chain: D: PDB Molecule:spheroplast protein y; PDBTitle: the crystal structure e. coli spy Phyre2 PDB 3lay chain F Region: 51 - 122 Aligned: 72 Modelled: 72 Confidence: 98.6% Identity: 17% PDB header:metal binding protein Chain: F: PDB Molecule:zinc resistance-associated protein; PDBTitle: alpha-helical barrel formed by the decamer of the zinc resistance-2 associated protein (stm4172) from salmonella enterica subsp. enterica3 serovar typhimurium str. lt2 Phyre2 PDB 2qgu chain A Region: 71 - 142 Aligned: 72 Modelled: 72 Confidence: 82.1% Identity: 8% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable signal peptide protein; PDBTitle: three-dimensional structure of the phospholipid-binding protein from2 ralstonia solanacearum q8xv73_ralsq in complex with a phospholipid at3 the resolution 1.53 a. northeast structural genomics consortium4 target rsr89 Phyre2 PDB 3cmn chain A domain 1 Region: 1 - 135 Aligned: 102 Modelled: 102 Confidence: 61.1% Identity: 20% Fold: Zincin-like Superfamily: Metalloproteases ("zincins"), catalytic domain Family: Caur0242-like Phyre2 PDB 3cmn chain A Region: 1 - 136 Aligned: 103 Modelled: 103 Confidence: 57.2% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:putative hydrolase; PDBTitle: crystal structure of a putative hydrolase with a novel fold2 from chloroflexus aurantiacus Phyre2 PDB 2i9l chain L Region: 112 - 136 Aligned: 25 Modelled: 25 Confidence: 54.3% Identity: 28% PDB header:immune system/viral protein Chain: L: PDB Molecule:virion membrane protein m25; PDBTitle: structure of fab 7d11 from a neutralizing antibody against the2 poxvirus l1 protein Phyre2 PDB 1ek8 chain A Region: 51 - 146 Aligned: 77 Modelled: 77 Confidence: 44.5% Identity: 21% Fold: RRF/tRNA synthetase additional domain-like Superfamily: Ribosome recycling factor, RRF Family: Ribosome recycling factor, RRF Phyre2 PDB 1dd5 chain A Region: 51 - 146 Aligned: 77 Modelled: 77 Confidence: 41.2% Identity: 16% Fold: RRF/tRNA synthetase additional domain-like Superfamily: Ribosome recycling factor, RRF Family: Ribosome recycling factor, RRF Phyre2 PDB 3g6i chain A Region: 45 - 136 Aligned: 92 Modelled: 91 Confidence: 39.9% Identity: 13% PDB header:unknown function Chain: A: PDB Molecule:putative outer membrane protein, part of carbohydrate PDBTitle: crystal structure of an outer membrane protein, part of a putative2 carbohydrate binding complex (bt_1022) from bacteroides3 thetaiotaomicron vpi-5482 at 1.93 a resolution Phyre2 PDB 2crj chain A Region: 110 - 148 Aligned: 39 Modelled: 39 Confidence: 37.7% Identity: 13% PDB header:gene regulation Chain: A: PDB Molecule:swi/snf-related matrix-associated actin- PDBTitle: solution structure of the hmg domain of mouse hmg domain2 protein hmgx2 Phyre2 PDB 2cto chain A Region: 110 - 139 Aligned: 30 Modelled: 30 Confidence: 37.6% Identity: 13% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:novel protein; PDBTitle: solution structure of the hmg box like domain from human2 hypothetical protein flj14904 Phyre2 PDB 2an7 chain A Region: 49 - 62 Aligned: 14 Modelled: 14 Confidence: 36.8% Identity: 36% PDB header:dna binding protein Chain: A: PDB Molecule:protein pard; PDBTitle: solution structure of the bacterial antidote pard Phyre2 PDB 1q44 chain A Region: 68 - 140 Aligned: 60 Modelled: 73 Confidence: 34.5% Identity: 10% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: PAPS sulfotransferase Phyre2 PDB 1olm chain A domain 1 Region: 50 - 108 Aligned: 59 Modelled: 59 Confidence: 34.4% Identity: 15% Fold: RuvA C-terminal domain-like Superfamily: CRAL/TRIO N-terminal domain Family: CRAL/TRIO N-terminal domain Phyre2 PDB 2k5j chain B Region: 49 - 91 Aligned: 43 Modelled: 43 Confidence: 33.4% Identity: 12% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein yiif; PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1 Phyre2 PDB 1pcf chain A Region: 124 - 146 Aligned: 23 Modelled: 23 Confidence: 32.6% Identity: 30% Fold: ssDNA-binding transcriptional regulator domain Superfamily: ssDNA-binding transcriptional regulator domain Family: Transcriptional coactivator PC4 C-terminal domain Phyre2 1 c3itfA_ 2 c3qzcA_ 3 c3o39A_ 4 c3epvB_ 5 c3oeoD_ 6 c3layF_ 7 c2qguA_ 8 d3cmna1 9 c3cmnA_ 10 c2i9lL_ 11 d1ek8a_ 12 d1dd5a_ 13 c3g6iA_ 14 c2crjA_ 15 c2ctoA_ 16 c2an7A_ 17 d1q44a_ 18 d1olma1 19 c2k5jB_ 20 d1pcfa_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3itfA_ 99.9 93 PDB header:signaling protein Chain: A: PDB Molecule:periplasmic adaptor protein cpxp; PDBTitle: structural basis for the inhibitory function of the cpxp adaptor2 protein 2 c3qzcA_ 99.9 100 PDB header:signaling protein Chain: A: PDB Molecule:periplasmic protein cpxp; PDBTitle: structure of the periplasmic stress response protein cpxp 3 c3o39A_ 99.8 26 PDB header:chaperone Chain: A: PDB Molecule:periplasmic protein related to spheroblast formation; PDBTitle: crystal structure of spy 4 c3epvB_ 99.7 8 PDB header:metal binding protein Chain: B: PDB Molecule:nickel and cobalt resistance protein cnrr; PDBTitle: x-ray structure of the metal-sensor cnrx in both the apo- and copper-2 bound forms 5 c3oeoD_ 99.7 30 PDB header:signaling protein Chain: D: PDB Molecule:spheroplast protein y; PDBTitle: the crystal structure e. coli spy 6 c3layF_ 98.6 17 PDB header:metal binding protein Chain: F: PDB Molecule:zinc resistance-associated protein; PDBTitle: alpha-helical barrel formed by the decamer of the zinc resistance-2 associated protein (stm4172) from salmonella enterica subsp. enterica3 serovar typhimurium str. lt2 7 c2qguA_ 82.1 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable signal peptide protein; PDBTitle: three-dimensional structure of the phospholipid-binding protein from2 ralstonia solanacearum q8xv73_ralsq in complex with a phospholipid at3 the resolution 1.53 a. northeast structural genomics consortium4 target rsr89 8 d3cmna1 61.1 20 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Caur0242-like 9 c3cmnA_ 57.2 19 PDB header:hydrolase Chain: A: PDB Molecule:putative hydrolase; PDBTitle: crystal structure of a putative hydrolase with a novel fold2 from chloroflexus aurantiacus 10 c2i9lL_ 54.3 28 PDB header:immune system/viral protein Chain: L: PDB Molecule:virion membrane protein m25; PDBTitle: structure of fab 7d11 from a neutralizing antibody against the2 poxvirus l1 protein 11 d1ek8a_ 44.5 21 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 12 d1dd5a_ 41.2 16 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 13 c3g6iA_ 39.9 13 PDB header:unknown function Chain: A: PDB Molecule:putative outer membrane protein, part of carbohydrate PDBTitle: crystal structure of an outer membrane protein, part of a putative2 carbohydrate binding complex (bt_1022) from bacteroides3 thetaiotaomicron vpi-5482 at 1.93 a resolution 14 c2crjA_ 37.7 13 PDB header:gene regulation Chain: A: PDB Molecule:swi/snf-related matrix-associated actin- PDBTitle: solution structure of the hmg domain of mouse hmg domain2 protein hmgx2 15 c2ctoA_ 37.6 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:novel protein; PDBTitle: solution structure of the hmg box like domain from human2 hypothetical protein flj14904 16 c2an7A_ 36.8 36 PDB header:dna binding protein Chain: A: PDB Molecule:protein pard; PDBTitle: solution structure of the bacterial antidote pard 17 d1q44a_ 34.5 10 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 18 d1olma1 34.4 15 Fold:RuvA C-terminal domain-like Superfamily:CRAL/TRIO N-terminal domain Family:CRAL/TRIO N-terminal domain 19 c2k5jB_ 33.4 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein yiif; PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1 20 d1pcfa_ 32.6 30 Fold:ssDNA-binding transcriptional regulator domain Superfamily:ssDNA-binding transcriptional regulator domain Family:Transcriptional coactivator PC4 C-terminal domain 21 c1o6uA_ not modelled 31.7 15 PDB header:transferase Chain: A: PDB Molecule:sec14-like protein 2; PDBTitle: the crystal structure of human supernatant protein factor 22 c3ieeA_ not modelled 30.8 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative exported protein; PDBTitle: crystal structure of hypothetical protein bf3319 from bacteroides2 fragilis (yp_212931.1) from bacteroides fragilis nctc 9343 at 1.70 a3 resolution 23 c2eqzA_ not modelled 30.6 8 PDB header:transcription Chain: A: PDB Molecule:high mobility group protein b3; PDBTitle: solution structure of the first hmg-box domain from high2 mobility group protein b3 24 c2co9A_ not modelled 29.6 21 PDB header:transcription Chain: A: PDB Molecule:thymus high mobility group box protein tox; PDBTitle: solution structure of the hmg_box domain of thymus high2 mobility group box protein tox from mouse 25 c1y698_ not modelled 27.8 19 PDB header:ribosome Chain: 8: PDB Molecule:ribosome recycling factor; PDBTitle: rrf domain i in complex with the 50s ribosomal subunit from2 deinococcus radiodurans 26 c3b7qA_ not modelled 27.7 17 PDB header:signaling protein Chain: A: PDB Molecule:uncharacterized protein ykl091c; PDBTitle: crystal structure of yeast sec14 homolog sfh1 in complex with2 phosphatidylcholine 27 c1zd1B_ not modelled 27.7 16 PDB header:transferase Chain: B: PDB Molecule:sulfotransferase 4a1; PDBTitle: human sulfortransferase sult4a1 28 c2e6oA_ not modelled 26.6 5 PDB header:transcription, cell cycle Chain: A: PDB Molecule:hmg box-containing protein 1; PDBTitle: solution structure of the hmg box domain from human hmg-box2 transcription factor 1 29 c3fghA_ not modelled 26.4 9 PDB header:transcription Chain: A: PDB Molecule:transcription factor a, mitochondrial; PDBTitle: human mitochondrial transcription factor a box b 30 c3lf9A_ not modelled 26.0 15 PDB header:immune system Chain: A: PDB Molecule:4e10_d0_1is1a_001_c (t161); PDBTitle: crystal structure of hiv epitope-scaffold 4e10_d0_1is1a_001_c 31 c1wr1B_ not modelled 25.5 26 PDB header:signaling protein Chain: B: PDB Molecule:ubiquitin-like protein dsk2; PDBTitle: the complex sturcture of dsk2p uba with ubiquitin 32 d1hsma_ not modelled 25.0 14 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 33 c2h8kA_ not modelled 24.8 21 PDB header:transferase Chain: A: PDB Molecule:sult1c3 splice variant d; PDBTitle: human sulfotranferase sult1c3 in complex with pap 34 d1akha_ not modelled 24.4 27 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 35 d1wqga1 not modelled 24.4 21 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 36 d1k99a_ not modelled 24.0 11 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 37 d1i11a_ not modelled 22.6 10 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 38 d1v63a_ not modelled 22.4 9 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 39 d1q20a_ not modelled 21.9 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 40 d1g3ma_ not modelled 21.9 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 41 d1eh1a_ not modelled 21.6 13 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 42 c2x5qA_ not modelled 21.6 27 PDB header:unknown function Chain: A: PDB Molecule:sso1986; PDBTitle: crystal structure of hypothetical protein sso1986 from2 sulfolobus solfataricus p2 43 c2gwhA_ not modelled 21.3 23 PDB header:transferase Chain: A: PDB Molecule:sulfotransferase 1c2; PDBTitle: human sulfotranferase sult1c2 in complex with pap and2 pentachlorophenol 44 c1hryA_ not modelled 20.9 16 PDB header:dna binding protein/dna Chain: A: PDB Molecule:human sry; PDBTitle: the 3d structure of the human sry-dna complex solved by2 multid-dimensional heteronuclear-edited and-filtered nmr 45 c1hrzA_ not modelled 20.9 16 PDB header:dna binding protein/dna Chain: A: PDB Molecule:human sry; PDBTitle: the 3d structure of the human sry-dna complex solved by2 multi-dimensional heteronuclear-edited and-filtered nmr 46 d1i94m_ not modelled 20.2 15 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Ribosomal protein S13 47 d2gzka2 not modelled 20.1 15 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 48 c2amiA_ not modelled 19.3 15 PDB header:cell cycle Chain: A: PDB Molecule:caltractin; PDBTitle: solution structure of the calcium-loaded n-terminal sensor2 domain of centrin 49 c3rh3A_ not modelled 18.9 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized duf3829-like protein; PDBTitle: crystal structure of an uncharacterized duf3829-like protein (bt_1908)2 from bacteroides thetaiotaomicron vpi-5482 at 2.10 a resolution 50 d1ckta_ not modelled 18.8 5 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 51 d1v65a_ not modelled 18.4 19 Fold:KRAB domain (Kruppel-associated box) Superfamily:KRAB domain (Kruppel-associated box) Family:KRAB domain (Kruppel-associated box) 52 c1hmfA_ not modelled 17.7 11 PDB header:dna-binding Chain: A: PDB Molecule:high mobility group protein fragment-b; PDBTitle: structure of the hmg box motif in the b-domain of hmg1 53 d1hmfa_ not modelled 17.7 11 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 54 c1wz6A_ not modelled 17.5 9 PDB header:transcription Chain: A: PDB Molecule:hmg-box transcription factor bbx; PDBTitle: solution structure of the hmg_box domain of murine bobby2 sox homolog 55 d1is1a_ not modelled 17.4 16 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 56 d1lwma_ not modelled 17.2 18 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 57 d1jebb_ not modelled 17.2 15 Fold:Globin-like Superfamily:Globin-like Family:Globins 58 c2zvpX_ not modelled 16.8 20 PDB header:transferase Chain: X: PDB Molecule:tyrosine-ester sulfotransferase; PDBTitle: crystal structure of mouse cytosolic sulfotransferase msult1d1 complex2 with pap and p-nitrophenol 59 d3d1kb1 not modelled 16.7 21 Fold:Globin-like Superfamily:Globin-like Family:Globins 60 c1j3xA_ not modelled 16.6 6 PDB header:dna binding protein Chain: A: PDB Molecule:high mobility group protein 2; PDBTitle: solution structure of the n-terminal domain of the hmgb2 61 d1j3xa_ not modelled 16.6 6 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 62 d2uubm1 not modelled 16.4 15 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Ribosomal protein S13 63 d1j99a_ not modelled 16.1 21 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 64 c3u2bC_ not modelled 16.1 10 PDB header:transcription/dna Chain: C: PDB Molecule:transcription factor sox-4; PDBTitle: structure of the sox4 hmg domain bound to dna 65 d1auaa1 not modelled 15.8 14 Fold:RuvA C-terminal domain-like Superfamily:CRAL/TRIO N-terminal domain Family:CRAL/TRIO N-terminal domain 66 d1gt0d_ not modelled 15.8 10 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 67 c2j8pA_ not modelled 15.7 28 PDB header:nuclear protein Chain: A: PDB Molecule:cleavage stimulation factor 64 kda subunit; PDBTitle: nmr structure of c-terminal domain of human cstf-64 68 d1j3da_ not modelled 15.6 14 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 69 d1ls6a_ not modelled 15.3 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 70 c3u3oA_ not modelled 15.3 16 PDB header:transferase Chain: A: PDB Molecule:sulfotransferase 1a1; PDBTitle: crystal structure of human sult1a1 bound to pap and two 3-cyano-7-2 hydroxycoumarin 71 c2da4A_ not modelled 15.3 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein dkfzp686k21156; PDBTitle: solution structure of the homeobox domain of the2 hypothetical protein, dkfzp686k21156 72 c2yulA_ not modelled 14.5 15 PDB header:transcription Chain: A: PDB Molecule:transcription factor sox-17; PDBTitle: solution structure of the hmg box of human transcription2 factor sox-17 73 d1hmja_ not modelled 14.1 6 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 74 c2d7lA_ not modelled 14.0 25 PDB header:gene regulation, dna binding protein Chain: A: PDB Molecule:wd repeat and hmg-box dna binding protein 1; PDBTitle: solution structure of the hmg box domain from human wd2 repeat and hmg-box dna binding protein 1 75 d3bfxa1 not modelled 13.8 24 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 76 c2kgrA_ not modelled 13.7 0 PDB header:protein binding Chain: A: PDB Molecule:intersectin-1; PDBTitle: solution structure of protein itsn1 from homo sapiens.2 northeast structural genomics consortium target hr5524a 77 d1aaba_ not modelled 13.7 3 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 78 c1aabA_ not modelled 13.7 3 PDB header:dna-binding Chain: A: PDB Molecule:high mobility group protein; PDBTitle: nmr structure of rat hmg1 hmga fragment 79 c2kz5A_ not modelled 13.6 21 PDB header:transcription Chain: A: PDB Molecule:transcription factor nf-e2 45 kda subunit; PDBTitle: solution nmr structure of transcription factor nf-e2 subunit's dna2 binding domain from homo sapiens, northeast structural genomics3 consortium target hr4653b 80 c1q1qA_ not modelled 13.6 14 PDB header:transferase Chain: A: PDB Molecule:sulfotransferase family, cytosolic, 2b, member 1 PDBTitle: crystal structure of human pregnenolone sulfotransferase2 (sult2b1a) in the presence of pap 81 d2lefa_ not modelled 13.2 11 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 82 c2cs1A_ not modelled 13.1 13 PDB header:dna binding protein Chain: A: PDB Molecule:pms1 protein homolog 1; PDBTitle: solution structure of the hmg domain of human dna mismatch2 repair protein 83 d1a9we_ not modelled 13.1 8 Fold:Globin-like Superfamily:Globin-like Family:Globins 84 d2e9xa1 not modelled 13.0 15 Fold:GINS helical bundle-like Superfamily:GINS helical bundle-like Family:PSF1 N-terminal domain-like 85 c3crqA_ not modelled 12.8 33 PDB header:transferase Chain: A: PDB Molecule:trna delta(2)-isopentenylpyrophosphate PDBTitle: structure of trna dimethylallyltransferase: rna2 modification through a channel 86 d1hbrb_ not modelled 12.7 15 Fold:Globin-like Superfamily:Globin-like Family:Globins 87 d2a3ra1 not modelled 12.6 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 88 c3ptjA_ not modelled 12.6 9 PDB header:hydrolase Chain: A: PDB Molecule:upf0603 protein at1g54780, chloroplastic; PDBTitle: structural and functional analysis of arabidopsis thaliana thylakoid2 lumen protein attlp18.3 89 d1aqua_ not modelled 12.4 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 90 d1uuja_ not modelled 12.3 33 Fold:Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain Superfamily:Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain Family:Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain 91 d1v64a_ not modelled 12.2 18 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 92 d1wova1 not modelled 12.1 13 Fold:Heme oxygenase-like Superfamily:Heme oxygenase-like Family:Eukaryotic type heme oxygenase 93 d1fmja_ not modelled 12.0 5 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 94 d1s7ea1 not modelled 12.0 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 95 d1qpwb_ not modelled 12.0 8 Fold:Globin-like Superfamily:Globin-like Family:Globins 96 c2kqxA_ not modelled 11.8 17 PDB header:chaperone binding protein Chain: A: PDB Molecule:curved dna-binding protein; PDBTitle: nmr structure of the j-domain (residues 2-72) in the2 escherichia coli cbpa 97 d1wh7a_ not modelled 11.7 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 98 d1fi6a_ not modelled 11.6 21 Fold:EF Hand-like Superfamily:EF-hand Family:Eps15 homology domain (EH domain) 99 c2q9qC_ not modelled 11.5 15 PDB header:replication Chain: C: PDB Molecule:dna replication complex gins protein psf1; PDBTitle: the crystal structure of full length human gins complex

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0