Job Description P0AE85 Confidence 26.03% Date Thu Jan 5 11:22:46 GMT 2012 Rank 30 Aligned Residues 80 % Identity 15% Template c3lf9A_ PDB info PDB header:immune system Chain: A: PDB Molecule:4e10_d0_1is1a_001_c (t161); PDBTitle: crystal structure of hiv epitope-scaffold 4e10_d0_1is1a_001_c Resolution 2.00 Å

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		51	.	.	.	.	.					.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.
Query SS confidence								.	.	.	.
Query Sequence		L	T	E	H	Q	R	.	.	.	.	Q	Q	M	R	D	L	M	Q	Q	A	R	H	E	Q	P	P	V	N	V	S	E	L	E	T	M	H	R	L	V	T	A	E	N	F	D	E	N	A	V	R	A	Q	A	E	K	M	A	N	E	Q	I	A	R	Q	V	E	M	A	K	V	R	N	Q	M	Y	R	L	L	T	P
Query Conservation								.	.	.	.
Alig confidence								.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	T	E	E	R	R	K	D	L	V	K	I	V	R	G	E	A	E	G	G	R	V	A	V	R	N	I	A	R	D	A	A	N	D	L	A	A	L	G	K	D	K	E	V	N	W	F	D	I	S	Q	A	L	W	E	I	Q	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	D
Template Known Secondary structure																																							G	G	G		T	T	S															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90																				.	.	.
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	Q	A	V	L	N	E	K	H	Q	Q	R	M	E	Q	L	R	D	V	T	Q	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	A	V	K	K	I	D	E	V	L	A	A	K	E	K	E	L	M	E	V	L	E	H
Template Known Secondary structure																							T	T
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions