Return to main results Retrieve Phyre Job Id

Job DescriptionP17443
Confidence99.36%DateThu Jan 5 11:36:10 GMT 2012
Rank44Aligned Residues293
% Identity10%Templatec3rhzB_
PDB info PDB header:transferaseChain: B: PDB Molecule:nucleotide sugar synthetase-like protein; PDBTitle: structure and functional analysis of a new subfamily of2 glycosyltransferases required for glycosylation of serine-rich3 streptococcal adhesions
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.. .......20.........30.........40.........50.........60.........70.........80..
Predicted Secondary structure  ....

























Query SS confidence 





. . . .





































































Query Sequence  RLMVMA. . . . GGTGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEADLVPKHGIEIDFIRISGLRGKGIKALIAAPLRIFN
Query Conservation 



  .... 
 


    
 

  
  


 
                 
     
                      
Alig confidence 





....

































...............................




Template Conservation 

 
    
        
        
   
   
         ...............................     
Template Sequence  RVYITNINGQSIQSTAQLCQNTVTDVAVSLGYRELGIYCYQIHT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DSESE
Template Known Secondary structure 
SS
TT
TT



GGG...............................S
Template Predicted Secondary structure 















...............................
Template SS confidence 















































































   2.......10.........20.........30.........40..... ....50
 
   83......90.........100....... ..110.........120........ .130.........140.........150
Predicted Secondary structure 






......





......








Query SS confidence 
























. . . . . .




















. . . . . .





















Query Sequence  AWRQARAIMKAYKPDVVLGMGGYVS. . . . . . GPGGLAAWSLGIPVVLHEQNG. . . . . . IAGLTNKWLAKIATKVMQAFPG
Query Conservation                
 

       ......                     ......                      
Alig confidence 
























......




















......





















Template Conservation      
  
   
   


                         


   
                     
 

  
  
Template Sequence  LSKRLDGIVAGLRHGDVVIFQTPTWNTTEFDEKLMNKLKLYDIKIVLFIHDVVPLMNFYLMDRTIAYYNKADVVVAPSQK
Template Known Secondary structure  TTT

TT


SS
TTSS
S

GGG

GGGTT
SS
Template Predicted Secondary structure 




















Template SS confidence 















































































   51........60.........70.........80.........90.........100.........110.........120.........130
 
   151........160.... .....170.........180.........190.........200.........210.........220........
Predicted Secondary structure 










..



























Query SS confidence 













. .































































Query Sequence  AFPNAEVVGNPVRT. . DVLALPLPQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGDSVTIWHQSGKGSQQSVEQ
Query Conservation                ..                    
                              
            
Alig confidence 













..
































........

















.....
Template Conservation      
                               
  

 
   
  ........  
         
     .....
Template Sequence  MIDKLRDFGMNVSKTVVQGMWDHPTQAPMFPALKREIHFPGNPERFSFV. . . . . . . . KEWKYDIPLKVYTWQNVE. . . . .
Template Known Secondary structure  TT


S

S
















S
TTT
GGG........GG


SS

S



.....
Template Predicted Secondary structure 


























........








.....
Template SS confidence 















































































   134.....140.........150.........160.........170.........180.. .......190.........200
 
   229230.........240.........250.........260.... .....270.........280.........290.........300.
Predicted Secondary structure 




















.......













Query SS confidence 



































. . . . . . .




































Query Sequence  AYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRSGAL. . . . . . . TVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAGAA
Query Conservation                                      .......            
              
  
   
 
Alig confidence  ......





























.......




































Template Conservation  ......    
   
     
        

              
       



 
 


        
 
     
Template Sequence  . . . . . . LPQNVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQEGIANQELIENNGLG
Template Known Secondary structure  ......

TT



TTSS


GGGTTS

T

TT
TTTT
Template Predicted Secondary structure  ......

































Template SS confidence 















































































   202.......210.........220.........230.........240.........250.........260.........270.....
 
   302.......310.........320.........330......... 340.........350...
Predicted Secondary structure 






.....
Query SS confidence 





































. . . . .













Query Sequence  KIIEQPQLSVDAVANTLAGWSRETLLTMAERARAASIP. . . . . DATERVANEVSRVA
Query Conservation    
   
     

 

  
       
   

     .....     

  

 
 
Alig confidence 



....





























.....













Template Conservation    
 ....        
  
          
                          
Template Sequence  WIVK. . . . DVEEAIMKVKNVNEDEYIELVKNVRSFNPILRKGFFTRRLLTESVFQAI
Template Known Secondary structure  S....S

TTT
Template Predicted Secondary structure 
....




Template SS confidence 
























































   276... 280.........290.........300.........310.........320........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions