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Job DescriptionP17443
Confidence99.42%DateThu Jan 5 11:36:10 GMT 2012
Rank43Aligned Residues348
% Identity14%Templatec3o3cD_
PDB info PDB header:transferaseChain: D: PDB Molecule:glycogen [starch] synthase isoform 2; PDBTitle: glycogen synthase basal state udp complex
Resolution3.51 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10 ... ......20.... .....30.........40...... ...50....
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Query Sequence  RLMV. MAG. . . . GTGGHVFPGLA. VAHHLMAQGWQVRWLGTADRME. . . . . . . . . . . . . . . . . . . . . . . . . . ADLVPKHG
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Template Sequence  HLLFETATEVANRVGGIYSVLKSKAPITVAQYKDHYHLIGPLNKATYQNEVDILDWKKPEAFSDEMRPVQHALQTMESRG
Template Known Secondary structure  TTTTS
SSSGGG

TTT

SSSGGGS
STTTT
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   8.10.........20.........30.........40.........50.........60.........70.........80.......
 
   55 ....60....... ..70.........80.........90.........100.
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Query Sequence  I. . . . . . . . . . . . . EIDFIRISGLRG. . . . . . . . . . . . . . . . . . . . KGIKALIAAPLRIFNAWRQARAIMKAYKPDVVLG
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Template Sequence  VHFVYGRWLIEGAPKVILFDLDSVRGYSNEWKGDLWSLVGIPSPENDFETNDAILLGYTVAWFLGEVAHLDSQHAIVAHF
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SSTT


GGGGGGG




TT


S
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   88.90.........100.........110.........120.........130.........140.........150.........160.......
 
   102.......110...... ...120.........130. ........140.........
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Query Sequence  MGGYVSGPGGLAAWS. LGIPVVLHEQNGIAG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LTNKWLAKIATKVMQAFP
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Template Sequence  HEWLAGVALPLCRKRRIDVVTIFTTHATLLGRYLCASGDFYNCLESVDVDHEAGRFGIYHRYCIERAAAHSADVFTTVSQ
Template Known Secondary structure  SGGG
TTT
S
SS
TT


TTGGGG

T
SSSS
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   168.170.........180.........190.........200.........210.........220.........230.........240.......
 
   150..... ....160.........170........ .180.........190.........200......
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Query Sequence  GAFPNA. . . . . . . . . EVVGNPVRTDVLALPLPQQRLAG. . . . . . . . . . . . . . REGPVRVLVVGGSQGARILNQTMPQVAA
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Template Sequence  ITAFEAEHLLKRKPDGILPNGLNVIKFQLHALKKEKINDFVRGHFHGCFDFDLDNTLYFFIAGRYEYKNKGADMFIEALA
Template Known Secondary structure  S


S



B
GGGT

STT


S
GGGSS

T
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   250.........260.........270.........280.........290.........300.........310.........320.........
 
   207. .210.........220
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Query Sequence  KL. . . . . . . . . . GDSVTIWHQSGK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  RLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQAEVRALENTVHEVTTSIGKRIFDHAIRYPELLKSSDKVMLKRRI
Template Known Secondary structure  TT
S



S




S
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   337..340.........350.........360.........370.........380.........390.........400.........410......
 
   221........230.........240.........250.........260.......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GSQQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRSGALTVS
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Template Sequence  LALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSPSDRVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYE
Template Known Secondary structure  TT


TT



SBSTTTTT
TT



TT
S

S


TT
SS



SS


SSB
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   430.........440.........450.........460.........470.........480.........490.........500.........
 
   268.270.........280.........290....... ..300........ .310.........320. ........330.......
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Query Sequence  EIAAAGLPALFVPFQHKDRQQYWNALPLEK. . AGAAKIIEQPQ. . . . . LSVDAVANTLAGW. . . SRETLLTMAERARAAS
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Template Sequence  PWGYTPAECTVMGVPSITTNVSGFGSYMEDLAKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTAAQAINQRNRTERLS
Template Known Secondary structure  SS
TT

SSBT

GGGS

SSS
T

G
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   510.........520.........530.........540.........550.........560.........570.........580.........
 
   338.340.........350....
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Query Sequence  IPDATERVANEVSRVAR
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Template Sequence  DLLDWKRMGLEYVKARQ
Template Known Secondary structure  GGGBT
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   595....600.........610.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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