Job Description P17443 Confidence 99.84% Date Thu Jan 5 11:36:10 GMT 2012 Rank 30 Aligned Residues 342 % Identity 8% Template c2x6rA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:trehalose-synthase tret; PDBTitle: crystal structure of trehalose synthase tret from p.2 horikoshi produced by soaking in trehalose Resolution 2.20 Å

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		4	.	.	.	.	.	10	.	.	.			.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence		Q	G	K	R	L	M	V	M	A	G	.	.	G	T	G	G	H	V	F	P	G	L	A	V	A	H	H	L	M	A	Q	G	W	Q	V	R	W	L	G	T	A	D	R	M	E	A	D	L	V	P	K	H	G	I	E	I	D	F	I	R	I	S	G	L	R	G	K	G	I	K	A	L	I	A	A	P	L	R	I	F
Query Conservation												.	.
Alig confidence												.	.																																									.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.
Template Sequence		K	G	R	S	F	V	H	V	N	S	T	S	F	G	G	G	V	A	E	I	L	H	S	L	V	P	L	L	R	S	I	G	I	E	A	R	W	F	V	I	E	G	P	T	E	F	F	N	V	T	K	T	.	.	.	.	.	.	F	H	N	A	L	Q	G	N	E	S	L	K	L	T	E	E	M	K	E	L	Y	L
Template Known Secondary structure		T	T								S		S	S	S	S	T														T	T	T																					.	.	.	.	.	.							T		S	S
Template Predicted Secondary structure																																																						.	.	.	.	.	.
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90							.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.					.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																																							.	.	.	.																		.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.																		.	.	.	.	.	.
Query Sequence		N	A	W	R	Q	A	R	A	I	M	K	A	Y	K	P	D	V	V	L	G	M	G	G	Y	V	S	G	P	G	G	L	A	A	W	S	L	G	I	P	V	V	L	H	E	Q	N	G	I	A	G	L	T	N	.	.	.	.	K	W	L	A	K	I	A	T	K	V	M	Q	A	F	P	G	A	.	.	.	.	.	.
Query Conservation																																																							.	.	.	.																		.	.	.	.	.	.
Alig confidence																																																							.	.	.	.																		.	.	.	.	.	.
Template Conservation
Template Sequence		N	V	N	R	E	N	S	K	F	I	D	L	S	S	F	D	Y	V	L	V	H	D	P	Q	P	A	A	L	I	E	F	Y	E	K	K	S	P	W	L	W	R	C	H	I	D	L	S	S	P	N	R	E	F	W	E	F	L	R	R	F	V	E	K	Y	D	R	Y	I	F	H	L	P	E	Y	V	Q	P	E	L	D
Template Known Secondary structure								T	T	S	S		G	G	G	S	S						S	S	T	T	G	G	G	G	G	G	S				S								S			S	S														T	T	S	S					S	S	G	G	G	S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.									.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.																																																			.
Query SS confidence																							.	.	.	.	.	.	.	.																																																			.
Query Sequence		F	P	N	A	E	V	V	G	N	P	V	R	T	D	V	L	A	L	P	L	P	.	.	.	.	.	.	.	.	Q	Q	R	L	A	G	R	E	G	P	V	R	V	L	V	V	G	G	S	Q	G	A	R	I	L	N	Q	T	M	P	Q	V	A	A	K	L	G	D	S	V	T	I	W	H	Q	S	G	K	G	S	.
Query Conservation																							.	.	.	.	.	.	.	.																																																			.
Alig confidence																							.	.	.	.	.	.	.	.																																																			.
Template Conservation
Template Sequence		R	N	K	A	V	I	M	P	P	S	I	D	P	L	S	E	K	N	V	E	L	K	Q	T	E	I	L	R	I	L	E	R	F	D	V	D	P	E	K	P	I	I	T	Q	V	S	R	F	D	P	W	K	G	I	F	D	V	I	E	I	Y	R	K	V	K	E	K	I	P	G	V	Q	L	L	L	V	G	V	M	A
Template Known Secondary structure		T	T	T								B		T	T	S	T	T	T	S														T	T			T	T	S										S	T	T	S														T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
											223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	Q	Q	S	V	E	Q	A	Y	A	E	A	G	Q	P	Q	H	K	V	T	E	F	I	D	D	M	A	A	A	Y	A	W	A	D	V	V	V	C	R	S	G	A	L	T	V	S	E	I	A	A	A	G	L	P	A	L	F	V	P	F	Q	H	K	D	R	Q	Q	Y	W	N	A	L
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	D	D	P	E	G	W	I	Y	F	E	K	T	L	R	K	I	G	E	D	Y	D	V	K	V	L	T	N	L	I	G	V	H	A	R	E	V	N	A	F	Q	R	A	S	D	V	I	L	Q	M	S	I	R	E	G	F	G	L	T	V	T	E	A	M	W	K	G	K	P	V	I	G	R	A	V	G	G	I	K	F
Template Known Secondary structure		T	T																T	T		T	T						G	G	G	T														S							S	S		S	S										T	T							S
Template Predicted Secondary structure
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.			.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.		.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure																														.	.																	.
Query SS confidence																														.	.																	.
Query Sequence		P	L	E	K	A	G	A	A	K	I	I	E	Q	P	Q	L	S	V	D	A	V	A	N	T	L	A	G	W	.	.	S	R	E	T	L	L	T	M	A	E	R	A	R	A	A	S	.	I	P	D	A	T	E	R	V	A	N	E	V	S	R	V	A	R	A
Query Conservation																														.	.																	.
Alig confidence														.	.	.	.													.	.																	.
Template Conservation														.	.	.	.
Template Sequence		Q	I	V	D	G	E	T	G	F	L	V	R	.	.	.	.	D	A	N	E	A	V	E	V	V	L	Y	L	L	K	H	P	E	V	S	K	E	M	G	A	K	A	K	E	R	V	R	K	N	F	I	I	T	K	H	M	E	R	Y	L	D	I	L	N	S
Template Known Secondary structure					B	T	T	T					S	.	.	.	.	S																																	T	B														T
Template Predicted Secondary structure														.	.	.	.
Template SS confidence
		353	.	.	.	.	.	.	360	.	.	.	.					.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions