Job Description P17443 Confidence 99.59% Date Thu Jan 5 11:36:10 GMT 2012 Rank 38 Aligned Residues 340 % Identity 13% Template c1uquB_ PDB info PDB header:synthase Chain: B: PDB Molecule:alpha, alpha-trehalose-phosphate synthase; PDBTitle: trehalose-6-phosphate from e. coli bound with udp-glucose. Resolution 2.0 Å

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		7	.	.	10	.	.				.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.				.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure								.	.	.																																										.	.	.																					.	.	.	.	.	.	.
Query SS confidence								.	.	.																																										.	.	.																					.	.	.	.	.	.	.
Query Sequence		R	L	M	V	M	A	.	.	.	G	G	T	G	G	H	V	F	P	G	L	A	V	A	H	H	L	M	A	Q	G	W	Q	V	R	W	L	G	T	A	D	R	M	E	A	D	L	V	P	K	H	.	.	.	G	I	E	I	D	F	I	R	I	S	G	L	R	G	K	G	I	K	A	L	.	.	.	.	.	.	.
Query Conservation								.	.	.																																										.	.	.																					.	.	.	.	.	.	.
Alig confidence								.	.	.						.	.	.																																		.	.	.																					.	.	.	.	.	.	.
Template Conservation																.	.	.
Template Sequence		R	L	V	V	V	S	N	R	I	A	P	A	G	G	.	.	.	L	A	V	G	I	L	G	A	L	K	A	A	G	G	L	W	F	G	W	S	G	E	T	G	N	E	D	Q	P	L	K	K	V	K	K	G	N	I	T	W	A	S	F	N	L	S	E	Q	D	L	D	E	Y	Y	N	Q	F	S	N	A	V	L	W
Template Known Secondary structure															S	.	.	.																						S		S		S	S									S	S	B																T	T	T					T
Template Predicted Secondary structure																.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.				.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
															74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.			.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.																									.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.																									.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	A	P	L	R	I	F	N	A	W	R	Q	A	R	A	I	M	K	A	.	.	Y	K	P	D	V	V	L	G	M	G	G	Y	V	S	G	P	G	G	L	A	A	W	S	L	.	G	I	P	V	V	L	H	E	Q	N	G	I	A	G	L	T	N	K	W	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.																									.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.																									.
Template Conservation
Template Sequence		P	A	F	H	Y	R	L	D	L	V	Q	F	Q	R	P	A	W	D	G	Y	L	R	V	N	A	L	L	A	D	K	L	L	P	L	L	Q	D	D	D	I	I	W	I	H	D	Y	H	L	L	P	F	A	H	E	L	R	K	R	G	V	N	N	R	I	G	F	F	L	H	I	P	F	P	T	P	E	I	F	N	A
Template Known Secondary structure					T	T		G	G	G																							G	G	G			T	T							S	G	G	G	T	T							T	T	T			S								S									T	T
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		138	.	140	.	.	.	.																																						.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.								.	.	.	.	170	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.
Query Sequence		A	K	I	A	T	K	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	Q	A	F	P	G	A	F	P	N	A	E	V	V	G	N	P	V	R	T	D	.	.	.	.	.	.	.	V	L	A	L	P	L	P	Q
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	P	T	Y	D	T	L	L	E	Q	L	C	D	Y	D	L	L	G	F	Q	T	E	N	D	R	L	A	F	L	D	C	L	S	N	L	T	R	V	T	T	R	S	A	K	S	H	T	A	W	G	K	A	F	R	T	E	V	Y	P	I	G	I	E	P	K	E	I	A	K	Q	A	A	G	P	L	P	P	K	L	A
Template Known Secondary structure		S	T	T									T	T	S	S					S	S															S							T	T					T	T																							S				G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.							.	.	.	.	.	.	220	.	.	.																	.	.	.	.	.	.	230	.
Predicted Secondary structure																																										.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	R	L	A	G	R	E	G	P	V	R	V	L	V	V	G	G	S	Q	G	A	R	I	L	N	Q	T	M	P	Q	V	A	A	K	L	G	D	S	V	T	.	.	.	.	.	.	I	W	H	Q	S	G	K	G	S	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	S	V	E	Q	A	Y	A
Query Conservation																																										.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	L	K	A	E	L	K	N	V	Q	N	I	F	S	V	E	R	L	D	Y	S	K	G	L	P	E	R	F	L	A	Y	E	A	L	L	E	K	Y	P	Q	H	H	G	K	I	R	Y	T	Q	I	A	P	T	S	R	G	D	V	Q	A	Y	Q	D	I	R	H	Q	L	E	N	E	A	G	R	I	N	G	K	Y	G
Template Known Secondary structure		T	S	T	T	T	S	T	T												G	G	G																	G	G	G	T	T	T												T	T	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.						.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.
Query Sequence		E	A	G	Q	P	Q	H	K	V	T	E	F	I	D	D	M	A	A	A	Y	A	W	A	D	V	V	V	C	R	S	G	A	L	T	V	S	E	I	A	A	A	G	L	P	A	L	F	V	P	F	Q	.	.	.	.	.	H	K	D	R	Q	Q	Y	W	N	A	L	P	L	E	K	A	G	A	A	K	I	I	E	Q
Query Conservation																																																					.	.	.	.	.
Alig confidence																																																					.	.	.	.	.																.	.	.
Template Conservation																																																																									.	.	.
Template Sequence		Q	L	G	W	T	P	L	Y	Y	L	N	Q	H	F	D	R	K	L	L	M	K	I	F	R	Y	S	D	V	G	L	V	T	P	L	R	D	G	M	N	L	V	A	K	E	Y	V	A	A	Q	D	P	A	N	P	G	V	L	V	L	S	Q	F	A	G	A	A	N	E	L	T	S	.	.	.	A	L	I	V	N	P
Template Known Secondary structure		B	T	T	B		S						S															S							S	S	B	S												S		T	T	S								T	T	B	G	G	G	G	T		T	T	.	.	.	S					T
Template Predicted Secondary structure																																																																									.	.	.
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.				.	.	.	400	.	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.				.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure																	.	.	.
Query SS confidence																	.	.	.
Query Sequence		P	Q	L	S	V	D	A	V	A	N	T	L	A	G	W	.	.	.	S	R	E	T	L	L	T	M	A	E	R	A	R	A	A	S	I	P	D	A	T	E	R	V	A	N	E	V	S	R	V	A	R
Query Conservation																	.	.	.
Alig confidence				.	.												.	.	.
Template Conservation				.	.
Template Sequence		Y	D	.	.	R	D	E	V	A	A	A	L	D	R	A	L	T	M	S	L	A	E	R	I	S	R	H	A	E	M	L	D	V	I	V	K	N	D	I	N	H	W	Q	E	C	F	I	S	D	L	K
Template Known Secondary structure		T		.	.													T																				T
Template Predicted Secondary structure				.	.
Template SS confidence
		403	.			.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.