Phyre 2 alignment of P27127 with d1v4va

Job Description P27127
Confidence 99.95% Date Thu Jan 5 11:43:14 GMT 2012

Rank 25 Aligned Residues 339

% Identity 12% Template d1v4va_

SCOP info UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-N-acetylglucosamine 2-epimerase

Resolution 1.80

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.			.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.						.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																						.	.									.																										.	.	.	.	.
Query SS confidence																						.	.									.																										.	.	.	.	.
Query Sequence	K	I	A	F	I	G	E	A	V	S	G	F	G	G	M	E	T	V	I	R	D	.	.	V	I	T	T	F	R	Q	Q	.	H	I	Q	S	E	M	F	F	F	C	R	N	D	K	M	D	K	G	W	L	E	G	I	K	Y	.	.	.	.	.	S	C	S	F	S	N	I	R	L	G	F	L	R	R	A	K	H	I
Query Conservation																						.	.									.																										.	.	.	.	.
Alig confidence							.	.	.	.	.	.										.	.									.																										.	.	.	.	.
Template Conservation							.	.	.	.	.	.
Template Sequence	R	V	V	L	A	F	.	.	.	.	.	.	G	T	R	P	E	A	T	K	X	A	P	V	Y	L	A	L	R	G	I	P	G	L	K	P	L	V	L	L	T	G	Q	H	R	E	Q	L	R	Q	A	L	S	L	F	G	I	Q	E	D	R	N	L	D	V	X	Q	E	R	Q	A	L	P	D	L	A	A	R	I	L
Template Known Secondary structure							.	.	.	.	.	.		S																T	S	T	T									S	S											T	T	T				S							S	S
Template Predicted Secondary structure							.	.	.	.	.	.
Template SS confidence
	7	.	.	10	.	.							.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80

	74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.								.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																						.																								.	.	.	.	.	.	.
Query SS confidence																						.																								.	.	.	.	.	.	.
Query Sequence	H	A	L	S	K	W	L	Q	E	Y	Q	P	D	I	V	I	C	I	D	V	I	.	S	C	L	F	A	A	K	A	R	K	K	S	G	I	D	M	P	V	F	S	W	P	H	.	.	.	.	.	.	.	F	S	L	D	H	K	K	H	A	E	Y	I	T	C	A	D	Y	H	L	A	I	S	S	G	I	K	Q	Q
Query Conservation																						.																								.	.	.	.	.	.	.
Alig confidence																						.																								.	.	.	.	.	.	.
Template Conservation
Template Sequence	P	Q	A	A	R	A	L	K	E	X	G	A	D	Y	V	L	V	H	G	D	T	L	T	T	F	A	V	A	W	A	A	F	L	E	G	I	P	V	G	H	V	E	A	G	L	R	S	G	N	L	K	E	P	F	P	E	E	A	N	R	R	L	T	D	V	L	T	D	L	D	F	A	P	T	P	L	A	K	A	N
Template Known Secondary structure										T	T		S						S	S														T	T							T						S		T	T	S	S	T	T													S					S	S
Template Predicted Secondary structure
Template SS confidence
	81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160

	146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.					.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure																											.	.	.	.
Query SS confidence																											.	.	.	.
Query Sequence	M	I	N	R	G	V	A	E	S	T	I	N	V	I	F	N	P	V	E	T	K	D	S	V	I	P	.	.	.	.	A	P	E	E	G	E	T	A	T	F	I	Y	V	G	R	M	K	F	E	G	Q	K	R	V	K	D	L	L	D	G	L	S	Q	A	K	G	N	W	K	L	H	V	L	G	D	G	S	D	F	E
Query Conservation																											.	.	.	.
Alig confidence																											.	.	.	.
Template Conservation
Template Sequence	L	L	K	E	G	K	R	E	E	G	I	L	V	T	G	Q	T	G	V	D	A	V	L	L	A	A	K	L	G	R	L	P	E	G	L	P	E	G	P	Y	V	T	V	T	X	H	R	R	E	N	W	P	L	L	S	D	L	A	Q	A	L	K	R	V	A	E	A	F	P	H	L	T	F	V	Y	P	V	H	L	N
Template Known Secondary structure			T	T	T			G	G	G																							T	T			S	S										G	G	G	G	G	G																T	T	S								S
Template Predicted Secondary structure
Template SS confidence
	161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240

	222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	C	Q	A	Y	G	R	E	L	N	I	D	D	R	I	V	W	Y	G	W	Q	Q	Y	P	W	E	L	V	Q	Q	D	I	E	K	V	S	A	L	L	L	T	S	S	F	E	G	F	P	M	T	L	L	E	A	L	S	W	G	I	P	C	I	S	A	D	C	V	S	G	P	A	D	I	I	Q	P	D	V	N	G
Query Conservation
Alig confidence																																											.	.	.	.	.																															.
Template Conservation																																											.	.	.	.	.																															.
Template Sequence	P	V	V	R	E	A	V	F	P	V	L	K	G	V	R	N	F	V	L	L	D	P	L	E	Y	G	S	X	A	A	L	X	R	A	S	L	L	L	V	T	D	S	.	.	.	.	.	G	G	L	Q	E	E	G	A	A	L	G	V	P	V	V	V	L	R	N	V	T	E	R	P	E	G	L	K	A	G	.	I	L
Template Known Secondary structure												T	T		T	T																		T							S		.	.	.	.	.										T	T							S	S	S		S								T	.	S
Template Predicted Secondary structure																																											.	.	.	.	.																															.
Template SS confidence
	241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.						.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.		.	.

	302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	H	L	Y	Q	P	G	D	I	A	G	F	V	T	L	L	N	K	Y	I	A	G	E	I	H	I	E	H	E	K	I	P	A	S	I	D	E	F	Y	Q	S	K	Y	Y	D	R	L	H	K	V	I	I	S	A	I
Query Conservation
Alig confidence						.																			.	.
Template Conservation						.																			.	.
Template Sequence	K	L	A	G	T	.	D	P	E	G	V	Y	R	V	V	K	G	L	L	E	N	P	E	E	.	.	L	S	R	X	R	K	A	K	N	P	Y	G	D	G	K	A	G	L	X	V	A	R	G	V	A	W	R	L
Template Known Secondary structure					S	.														T					.	.							S			S	S			S														T
Template Predicted Secondary structure						.																			.	.
Template SS confidence
	315	.	.	.	.		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.			.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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