Phyre 2 alignment of P27127 with d1f6da

Job Description P27127
Confidence 99.96% Date Thu Jan 5 11:43:14 GMT 2012

Rank 23 Aligned Residues 341

% Identity 11% Template d1f6da_

SCOP info UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-N-acetylglucosamine 2-epimerase

Resolution 2.50

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.						.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.
Query Sequence	M	K	I	A	F	I	G	E	A	V	S	G	F	G	G	M	E	T	V	I	R	D	V	I	T	T	F	R	Q	Q	H	I	Q	S	E	M	F	F	F	C	R	N	D	K	M	D	K	G	W	L	E	G	I	.	.	.	.	.	K	Y	S	C	S	F	S	N	I	R	L	G	F	L	R	R	A	K	H	I	H	A
Query Conservation																																																						.	.	.	.	.
Alig confidence																										.	.	.																										.	.	.	.	.
Template Conservation																										.	.	.
Template Sequence	X	K	V	L	T	V	F	G	T	R	P	E	A	I	K	X	A	P	L	V	H	A	L	A	K	.	.	.	D	P	F	F	E	A	K	V	C	V	T	A	Q	H	R	E	X	L	D	Q	V	L	K	L	F	S	I	V	P	D	Y	D	L	N	I	X	Q	P	G	Q	G	L	T	E	I	T	C	R	I	L	E	G
Template Known Secondary structure									S																	.	.	.		T	T										T	T	G	G	G	G							T	T				S							S	S	S	S
Template Predicted Secondary structure																										.	.	.
Template SS confidence
	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.				.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.

	76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.									.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.
Query Sequence	L	S	K	W	L	Q	E	Y	Q	P	D	I	V	I	C	I	D	V	I	S	C	L	F	A	A	K	A	R	K	K	S	G	I	D	M	P	V	F	S	W	P	.	.	.	.	.	.	.	.	H	F	S	L	D	H	K	K	H	A	E	Y	I	T	C	A	D	Y	H	L	A	I	S	S	G	I	K	Q	Q	M	I
Query Conservation																																										.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	L	K	P	I	L	A	E	F	K	P	D	V	V	L	V	H	G	D	T	T	T	T	L	A	T	S	L	A	A	F	Y	Q	R	I	P	V	G	H	V	E	A	G	L	R	T	G	D	L	Y	S	P	W	P	E	E	A	N	R	T	L	T	G	H	L	A	X	Y	H	F	S	P	T	E	T	S	R	Q	N	L	L
Template Known Secondary structure											S						T	T													T	T	T							S						S		T	T	S	S	T	T											T		S					S	S
Template Predicted Secondary structure
Template SS confidence
	78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.

	148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.																		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	N	R	G	V	A	E	S	T	I	N	V	I	F	N	P	V	E	T	K	D	S	V	I	P	A	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	E	T	A	T	F	I	Y	V	G	R	M	K	F	E	G	Q	K	R	V	K	D	L	L	D	G	L	S	Q	A	K	G	N	W	K
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	R	E	N	V	A	D	S	R	I	F	I	T	G	N	T	V	I	D	A	L	L	W	V	R	D	Q	V	X	S	S	D	K	L	R	S	E	L	A	A	N	Y	P	F	I	D	P	D	K	K	X	I	L	V	T	G	H	R	R	E	S	F	G	R	G	F	E	E	I	C	H	A	L	A	D	I	A	T	T	H	Q
Template Known Secondary structure		T	T			G	G	G																			T	T	T										T	T		T	T			T	T	S										B	S	S																				T
Template Predicted Secondary structure
Template SS confidence
	158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.

	211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure
Query SS confidence
Query Sequence	L	H	V	L	G	D	G	S	D	F	E	K	C	Q	A	Y	G	R	E	L	N	I	D	D	R	I	V	W	Y	G	W	Q	Q	Y	P	W	E	L	V	Q	Q	D	I	E	K	V	S	A	L	L	L	T	S	S	F	E	G	F	P	M	T	L	L	E	A	L	S	W	G	I	P	C	I	S	A	D	C	V	S	G
Query Conservation
Alig confidence																																																						.	.	.	.	.																			.
Template Conservation																																																						.	.	.	.	.																			.
Template Sequence	D	I	Q	I	V	Y	P	V	H	L	N	P	N	V	R	E	P	V	N	R	I	L	G	H	V	K	N	V	I	L	I	D	P	Q	E	Y	L	P	F	V	W	L	X	N	H	A	W	L	I	L	T	D	S	.	.	.	.	.	G	G	I	Q	E	E	A	P	S	L	G	K	P	V	L	V	X	R	.	D	T	T
Template Known Secondary structure	T									B													T	T		T	T																				S					S	S	.	.	.	.	.	S	G	G	G	G	T	G	G	G	G	T							S	.	S
Template Predicted Secondary structure																																																						.	.	.	.	.																			.
Template SS confidence
	238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290						.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.		.	310	.

	291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	P	A	D	I	I	Q	P	D	V	N	G	H	L	Y	Q	P	G	D	I	A	G	F	V	T	L	L	N	K	Y	I	A	G	E	I	H	I	E	H	E	K	I	P	A	S	I	D	E	F	Y	Q	S	K	Y	Y	D	R	L	H	K	V	I	I	S
Query Conservation
Alig confidence																	.																			.	.
Template Conservation																	.																			.	.
Template Sequence	E	R	P	E	A	V	T	A	G	T	V	R	L	V	G	T	.	D	K	Q	R	I	V	E	E	V	T	R	L	L	K	D	E	N	E	.	.	Y	Q	A	X	S	R	A	H	N	P	Y	G	D	G	Q	A	C	S	R	I	L	E	A	L	K	N
Template Known Secondary structure	S								T	S						S	.	S																		.	.							S			T	T			S
Template Predicted Secondary structure																	.																			.	.
Template SS confidence
	312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.			.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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