Phyre 2 alignment of P27127 with c3rhzB

Job Description P27127
Confidence 99.97% Date Thu Jan 5 11:43:14 GMT 2012

Rank 22 Aligned Residues 308

% Identity 13% Template c3rhzB_

PDB info PDB header:transferase Chain: B: PDB Molecule:nucleotide sugar synthetase-like protein; PDBTitle: structure and functional analysis of a new subfamily of2 glycosyltransferases required for glycosylation of serine-rich3 streptococcal adhesions

Resolution 1.90 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.		.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence	M	K	I	A	F	I	.	G	E	A	V	S	G	F	G	G	M	E	T	V	I	R	D	V	I	T	T	F	R	Q	Q	H	I	Q	S	E	M	F	F	F	C	R	N	D	K	M	D	K	G	W	L	E	G	I	K	Y	S	C	S	F	S	N	I	R	L	G	F	L	R	R	A	K	H	I	H	A	L	S	K	W
Query Conservation							.
Alig confidence							.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	M	R	V	Y	I	T	N	I	N	G	Q	S	I	Q	S	T	A	Q	L	C	Q	N	T	V	T	D	V	A	V	S	L	G	Y	R	E	L	G	I	Y	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	Q	I	H	T	D	S	E	S	E	L	S	K	R	L	D	G	I	V	A	G
Template Known Secondary structure										S	S		T	T																	T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			G	G	G	S													T	T	T
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40																				.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.

	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110								.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.
Query Sequence	L	Q	E	Y	Q	P	D	I	V	I	C	I	D	V	I	S	C	L	F	A	A	K	A	R	K	K	S	G	I	D	M	.	.	.	.	.	.	.	P	V	F	S	W	P	H	F	S	L	D	H	K	K	H	A	E	Y	I	T	C	A	D	Y	H	L	A	I	S	S	G	I	K	Q	Q	M	I	N	R	G	V	A
Query Conservation																																.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.
Template Conservation
Template Sequence	L	R	H	G	D	V	V	I	F	Q	T	P	T	W	N	T	T	E	F	D	E	K	L	M	N	K	L	K	L	Y	D	I	K	I	V	L	F	I	H	D	V	V	P	L	M	N	F	Y	L	M	D	R	T	I	A	Y	Y	N	K	A	D	V	V	V	A	P	S	Q	K	M	I	D	K	L	R	D	F	G	M	N
Template Known Secondary structure			T	T										S	S													T	T	S	S								S			G	G	G			G	G	G									T	T		S					S											T	T
Template Predicted Secondary structure
Template SS confidence
	62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.

	153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	S	T	I	N	V	I	F	N	P	V	E	T	K	D	S	V	I	P	A	P	E	E	G	E	T	A	T	F	I	Y	V	G	R	M	K	F	E	G	Q	K	R	V	K	D	L	L	D	G	L	S	Q	A	K	G	N	W	K	L	H	V	L	G	D	G	S	D	F	E	K	C	Q	A	Y	G	R	E	L	N	I
Query Conservation
Alig confidence																							.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	V	S	K	T	V	V	Q	G	M	W	D	H	P	T	Q	A	P	M	F	P	A	L	.	.	.	.	.	K	R	E	I	H	F	P	G	N	P	E	R	F	S	F	V	K	E	W	K	Y	D	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	K	V	Y	T	W	Q	N	V
Template Known Secondary structure		S							S														.	.	.	.	.								S		T	T	T		G	G	G	G	G				S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S
Template Predicted Secondary structure																							.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.						.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190																					.	.	.	.	.	.	.	.	.

	233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.								.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.
Query Sequence	D	D	R	I	V	W	Y	G	W	Q	Q	Y	P	W	E	L	V	Q	Q	D	I	E	K	V	S	A	L	L	L	T	S	.	.	.	.	.	.	.	S	F	E	G	F	P	M	T	L	L	E	A	L	S	W	G	I	P	C	I	S	A	D	C	V	S	G	P	A	D	I	I	Q	P	D	V	N	G	H	L	Y	Q
Query Conservation																																.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.																								.
Template Conservation																																																														.
Template Sequence	E	L	P	Q	N	V	H	K	I	N	Y	R	P	D	E	Q	L	L	M	E	M	S	Q	G	G	F	G	L	V	W	M	D	D	K	D	K	E	Y	Q	S	L	Y	C	S	Y	K	L	G	S	F	L	A	A	G	I	P	V	I	V	Q	E	.	G	I	A	N	Q	E	L	I	E	N	N	G	L	G	W	I	V	K
Template Known Secondary structure				T	T																	T	T	S	S								G	G	G					T	T	S												T							T	.	T		T	T							T	T						S
Template Predicted Secondary structure																																																														.
Template SS confidence
	201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.		.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.

	306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.		.	350	.	.	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence	P	G	D	I	A	G	F	V	T	L	L	N	K	Y	I	A	G	E	I	H	I	E	H	E	K	I	P	A	S	I	D	E	F	Y	Q	S	K	Y	Y	D	R	L	H	.	K	V	I	I	S	A	I
Query Conservation																																												.
Alig confidence	.	.																																										.
Template Conservation	.	.
Template Sequence	.	.	D	V	E	E	A	I	M	K	V	K	N	V	N	E	D	E	Y	I	E	L	V	K	N	V	R	S	F	N	P	I	L	R	K	G	F	F	T	R	R	L	L	T	E	S	V	F	Q	A	I
Template Known Secondary structure	.	.	S																											T					T	T
Template Predicted Secondary structure	.	.
Template SS confidence
			280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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