Job Description P27127 Confidence 97.92% Date Thu Jan 5 11:43:14 GMT 2012 Rank 49 Aligned Residues 323 % Identity 10% Template c3l7mC_ PDB info PDB header:structural protein Chain: C: PDB Molecule:teichoic acid biosynthesis protein f; PDBTitle: structure of the wall teichoic acid polymerase tagf, h548a Resolution 2.85 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	A	F	I	G	E	A	V	S	G	F	G	G	M	E	T	V	I	R	D	V	I	T	T	F	R	Q	Q	H	I	Q	S	E	M	F	F	F	C	R	N	D	K	M	D	K	G	W	L	E	G	I	K	Y	S	C	S	F	S	N	I	R	L	G	F	L	R	R	A	K	H	I	H	A	L	S	K	W	L	Q
Query Conservation
Alig confidence																							.	.	.																				.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.																				.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	I	V	F	E	S	F	G	G	K	N	Y	S	D	S	P	K	Y	I	Y	E	.	.	.	Y	M	Q	K	Y	Y	P	N	Y	R	Y	I	W	S	F	K	N	P	D	.	K	N	V	V	P	G	S	A	E	K	V	K	R	N	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	Y	Y	Q	A
Template Known Secondary structure							B	G	G	G	T	B	S										.	.	.							T	T	S							S	S	G	G	.	G					S	S						T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																							.	.	.																				.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.				.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.		.	.	.	.	.	.	400	.	.	.	.	.	.	.	.																.	410	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.															.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	Y	Q	P	D	I	V	I	C	I	D	V	I	S	C	L	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	K	A	R	K	K	S	G	I	D	M	P	V	F	S	W	P	H	F	S	L	D	H	K	K	H	A	E	Y	I	T	C	A	D	Y	H	L	A	I	S	S	G	I	K	Q	Q	M	I
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	S	E	A	S	H	W	V	S	N	A	R	T	P	L	Y	L	N	K	K	E	N	Q	T	Y	I	Q	T	W	H	G	T	P	L	K	R	L	A	N	D	M	K	V	V	R	M	P	G	T	T	T	P	K	Y	K	R	N	F	N	R	E	T	S	R	W	D	Y	L	I	S	P	N	R	Y	S	T	E	I	F	R
Template Known Secondary structure											S	S				T	T	S				T	T	S							S				S	B			G	G	G							T	T															T	T		S					S	S
Template Predicted Secondary structure
Template SS confidence
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.
		148		.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.													.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.									.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure			.																											.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Query SS confidence			.																											.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Query Sequence		N	.	R	G	V	A	E	S	T	I	N	V	I	F	N	P	V	E	T	K	D	S	V	I	P	A	P	E	.	.	.	.	.	.	.	.	.	.	.	.	E	G	E	T	A	T	F	I	Y	V	G	R	M	K	F	E	G	Q	.	.	.	.	.	.	.	.	K	R	V	K	D	L	L	D	G	L	S	Q	A	K
Query Conservation			.																											.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Alig confidence			.																											.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	A	F	W	M	D	E	E	R	I	L	E	I	G	Y	P	R	N	D	V	L	V	N	R	A	N	D	Q	E	Y	L	D	E	I	R	T	H	L	N	L	P	S	D	K	K	V	I	M	Y	A	P	T	W	R	D	D	E	F	V	S	K	G	K	Y	L	F	E	L	K	I	D	L	D	N	L	Y	K	E	L	G
Template Known Secondary structure				T	T			G	G	G				S			G	G	G						S	T	T												T	T			S	S												G	G	G			G	G	G	S	S					T	T										T
Template Predicted Secondary structure
Template SS confidence
		495	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		G	N	W	K	L	H	V	L	G	D	G	S	D	F	E	K	C	Q	A	Y	G	R	E	L	N	I	D	D	R	I	V	W	Y	G	W	Q	Q	Y	P	W	E	L	V	Q	Q	D	I	E	K	V	S	A	L	L	L	T	S	S	F	E	G	F	P	M	T	L	L	E	A	L	S	W	G	I	P	C	I	S	A	.
Query Conservation																																																																																	.
Alig confidence																				.	.	.	.	.	.	.	.																														.	.	.	.	.																				.
Template Conservation																				.	.	.	.	.	.	.	.																														.	.	.	.	.
Template Sequence		D	D	Y	V	I	L	L	R	M	A	Y	L	I	S	N	A	L	D	.	.	.	.	.	.	.	.	L	S	G	Y	E	N	F	A	I	D	V	S	N	Y	N	D	V	S	E	L	F	L	I	S	D	C	L	I	T	.	.	.	.	.	D	Y	S	S	V	M	F	D	Y	G	I	L	K	R	P	Q	F	F	F	A
Template Known Secondary structure		T	T													T	T			.	.	.	.	.	.	.	.		T	T		T	T	T					T	T		S								T		S					.	.	.	.	.	S	S		T	T					G	G	G	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.																														.	.	.	.	.
Template SS confidence
		575	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.									.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.						.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.
									286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.			.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																																																									.	.
Query SS confidence		.	.	.	.	.	.	.																																																									.	.
Query Sequence		.	.	.	.	.	.	.	D	C	V	S	G	P	A	D	I	I	Q	P	D	V	N	G	H	L	Y	Q	P	G	D	I	A	G	F	V	T	L	L	N	K	Y	I	A	G	E	I	H	I	E	H	E	K	I	P	A	S	I	D	E	F	Y	Q	S	.	.	K	Y	Y	D	R	L	H	K	V	I	I	S	A	I	S
Query Conservation		.	.	.	.	.	.	.																																																									.	.
Alig confidence		.	.	.	.	.	.	.																					.	.																																			.	.
Template Conservation																													.	.
Template Sequence		Y	D	I	D	K	Y	D	K	G	L	R	G	F	Y	M	N	Y	M	E	D	L	P	G	P	I	Y	T	.	.	E	P	Y	G	L	A	K	E	L	K	N	L	D	K	V	Q	Q	Q	Y	Q	E	K	I	D	A	F	Y	D	R	F	C	S	V	D	N	G	K	A	S	Q	Y	I	G	D	L	I	H	K	D	I	K
Template Known Secondary structure		T	T	T	T	T	T	T	T	T			S	B	S	S		T	T	T	S	S	S	S				S	.	.	S	S																													T	T	T			S
Template Predicted Secondary structure																													.	.
Template SS confidence
		642	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.			.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.
		357	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	Q
Template Known Secondary structure			T
Template Predicted Secondary structure
Template SS confidence
		720	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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