Job Description P27127 Confidence 99.97% Date Thu Jan 5 11:43:14 GMT 2012 Rank 21 Aligned Residues 340 % Identity 10% Template c3dzcA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:udp-n-acetylglucosamine 2-epimerase; PDBTitle: 2.35 angstrom resolution structure of wecb (vc0917), a udp-n-2 acetylglucosamine 2-epimerase from vibrio cholerae. Resolution 2.35 Å

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		1	.		.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.							.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure				.																																											.	.	.	.	.	.
Query SS confidence				.																																											.	.	.	.	.	.
Query Sequence		M	K	.	I	A	F	I	G	E	A	V	S	G	F	G	G	M	E	T	V	I	R	D	V	I	T	T	F	R	Q	Q	H	I	Q	S	E	M	F	F	F	C	R	N	D	K	.	.	.	.	.	.	M	D	K	G	W	L	E	G	I	K	Y	S	C	S	F	S	N	I	R	L	G	F	L	R	R	A	K	H	I
Query Conservation				.																																											.	.	.	.	.	.
Alig confidence				.														.	.	.	.																										.	.	.	.	.	.
Template Conservation																		.	.	.	.
Template Sequence		M	K	K	V	L	I	V	F	G	T	R	P	E	A	I	K	.	.	.	.	M	A	P	L	V	Q	Q	L	C	Q	D	N	R	F	V	A	K	V	C	V	T	G	Q	H	R	E	M	L	D	Q	V	L	E	L	F	S	I	T	P	D	F	D	L	N	I	M	E	P	G	Q	T	L	N	G	V	T	S	K	I	L
Template Known Secondary structure											S							.	.	.	.												T	T										S	S	S										T	T				S								T	T
Template Predicted Secondary structure																		.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.					.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.									.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.
Query Sequence		H	A	L	S	K	W	L	Q	E	Y	Q	P	D	I	V	I	C	I	D	V	I	S	C	L	F	A	A	K	A	R	K	K	S	G	I	D	M	P	V	.	.	.	.	.	.	.	.	F	S	W	P	H	F	S	L	D	H	K	K	H	A	E	Y	I	T	C	A	D	Y	H	L	A	I	S	S	G	I	K	Q	Q
Query Conservation																																									.	.	.	.	.	.	.	.
Alig confidence																																									.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	G	M	Q	Q	V	L	S	S	E	Q	P	D	V	V	L	V	H	G	D	T	A	T	T	F	A	A	S	L	A	A	Y	Y	Q	Q	I	P	V	G	H	V	E	A	G	L	R	T	G	N	I	Y	S	P	W	P	E	E	G	N	R	K	L	T	A	A	L	T	Q	Y	H	F	A	P	T	D	T	S	R	A	N
Template Known Secondary structure														S						T	T	S												T	T	T							T						S		T	T	S	S	T	T											T		S					S	S
Template Predicted Secondary structure
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.																		.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	I	N	R	G	V	A	E	S	T	I	N	V	I	F	N	P	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	T	K	D	S	V	I	P	A	P	E	E	G	E	T	A	T	F	I	Y	V	G	R	M	K	F	E	G	Q	K	R	V	K	D	L	L	D	G	L	S	Q	A	K	G	N
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	L	Q	E	N	Y	N	A	E	N	I	F	V	T	G	N	T	V	I	D	A	L	L	A	V	R	E	K	I	H	T	D	M	D	L	Q	A	T	L	E	S	Q	F	P	M	L	D	A	S	K	K	L	I	L	V	T	G	H	R	R	E	S	F	G	G	G	F	E	R	I	C	Q	A	L	I	T	T	A	E	Q
Template Known Secondary structure					T	T			G	G	G																																T		T	T			T	T	S								S		B				T	T
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	K	L	H	V	L	G	D	G	S	D	F	E	K	C	Q	A	Y	G	R	E	L	N	I	D	D	R	I	V	W	Y	G	W	Q	Q	Y	P	W	E	L	V	Q	Q	D	I	E	K	V	S	A	L	L	L	T	S	S	F	E	G	F	P	M	T	L	L	E	A	L	S	W	G	I	P	C	I	S	A	D	C	V
Query Conservation
Alig confidence																																																						.	.	.	.	.																						.
Template Conservation																																																						.	.	.	.	.																						.
Template Sequence		H	P	E	C	Q	I	L	Y	P	V	H	L	N	P	N	V	R	E	P	V	N	K	L	L	K	G	V	S	N	I	V	L	I	E	P	Q	Q	Y	L	P	F	V	Y	L	M	D	R	A	H	I	I	L	.	.	.	.	.	T	D	S	G	G	I	Q	E	E	A	P	S	L	G	K	P	V	L	V	M	R	.	E
Template Known Secondary structure			T	T									B												T	T	T		T	T																				S				.	.	.	.	.		S		S	G	G	G	T	T	G	G	G	G	T								.	S
Template Predicted Secondary structure																																																						.	.	.	.	.																						.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.						.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.		310
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	P	A	D	I	I	Q	P	D	V	N	G	H	L	Y	Q	P	G	D	I	A	G	F	V	T	L	L	N	K	Y	I	A	G	E	I	H	I	E	H	E	K	I	P	A	S	I	D	E	F	Y	Q	S	K	Y	Y	D	R	L	H	K	V	I	I	S
Query Conservation
Alig confidence																				.																			.	.
Template Conservation																				.																			.	.
Template Sequence		T	T	E	R	P	E	A	V	A	A	G	T	V	K	L	V	G	T	.	N	Q	Q	Q	I	C	D	A	L	S	L	L	L	T	D	P	Q	A	.	.	Y	Q	A	M	S	Q	A	H	N	P	Y	G	D	G	K	A	C	Q	R	I	A	D	I	L	A	K
Template Known Secondary structure		S		S								T	S					T	T	.																			.	.						T	S			T	T			S
Template Predicted Secondary structure																				.																			.	.
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.		.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.			.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions