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Job DescriptionP27127
Confidence99.94%DateThu Jan 5 11:43:14 GMT 2012
Rank26Aligned Residues314
% Identity11%Templatec2xcuC_
PDB info PDB header:transferaseChain: C: PDB Molecule:3-deoxy-d-manno-2-octulosonic acid transferase; PDBTitle: membrane-embedded monofunctional glycosyltransferase waaa of aquifex2 aeolicus, comlex with cmp
Resolution2.42 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   15....20.........30.........40.........50.........60.........70.........80.........90....
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Query Sequence  GMETVIRDVITTFRQQHIQSEMFFFCRNDKMDKGWLEGIKYSCSFSNIRLGFLRRAKHIHALSKWLQEYQPDIVICIDVI
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Template Sequence  GEFNTFLPILKEL. KREHRILLTYFSPRAREYLKTKSDFYDCLHPLPLDNP. . . . . . . . FSVKRFEELSKPKALIVVERE
Template Known Secondary structure  .TTTS
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TTTTGGG
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   30.........40.. .......50.........60.........70......... 80.........90.........100
 
   95....100.........110.........120.........130.........140.........150.........160.........170....
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Query Sequence  SCLFAAKARKKSGIDMPVFSWPHFSLDHKKHAEYITCADYHLAISSGIKQQMINRGVAESTINVIFNPVETKDSVIPAPE
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Template Sequence  FWPSLIIFT. . . . . KVPKILVNAYAKGSLIEKILSKKFDLIIMRTQEDVEKFKTFGAK. . RVFSCG. . . NLKFICQKGKG
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   101........ 110.........120.........130.........140.........150... ...... 160.........170
 
   175....180.........190.........200.........210.........220 .........230.........240.........
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Query Sequence  EGETATFIYVGRMKFEGQKRVKDLLDGLSQAKGNWKLHVLGDGSDF. . . . . EKCQAYGRELNIDDRIVWYGWQQYPWELV
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Template Sequence  IKLKGEFIVAGSIHTGEVEIILKAFKEIKKTYSSLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGIL
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GGGTT
TTSSGGGTT

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   171........180.........190.........200.........210.........220.........230.........240.........250
 
   250........ .260.........270.........280.........290....... ..300.........310.........320......
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Query Sequence  QQDIEKVSA. LLLTSSFEGFPMTLLEALSWGIPCISADCVSGPADIIQP. DVNGHLYQPGDIAGFVTLLNKYIAGEIHI.
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Template Sequence  KELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLEKEGAGFEVKNETELVTKLTELLSVKKEIK
Template Known Secondary structure  GGG
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   251........260.........270.........280.........290.........300.........310.........320.........330
 
   327..330.........340.........350..
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Query Sequence  EHEKIPASIDEFYQSKYYDRLHKVII
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Template Sequence  VEEKSREIKGCY. . . . . LEKLREFLR
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   331........340.. .......350.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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