Job Description P27127 Confidence 99.81% Date Thu Jan 5 11:43:14 GMT 2012 Rank 32 Aligned Residues 324 % Identity 13% Template c2p6pB_ PDB info PDB header:transferase Chain: B: PDB Molecule:glycosyl transferase; PDBTitle: x-ray crystal structure of c-c bond-forming dtdp-d-olivose-transferase2 urdgt2 Resolution 1.88 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	I	A	F	I	G	E	A	V	S	G	F	G	G	M	E	T	V	I	R	D	V	I	T	T	F	R	Q	Q	H	I	Q	S	E	M	F	F	F	C	R	N	D	K	M	D	K	G	W	L	E	G	I	K	Y	S	C	S	F	S	N	I	R	L	G	F	L	R	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.																													.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.																													.	.
Template Sequence		M	R	I	L	F	V	A	.	.	.	A	G	S	P	A	T	V	F	A	L	A	P	L	A	T	A	A	R	N	A	G	H	Q	V	V	M	A	A	.	.	N	Q	D	M	G	P	V	V	T	G	V	G	L	P	A	V	A	T	T	D	L	P	I	R	H	F	I	T	T	D	R	E	G	R	P	E	A	I	P	S
Template Known Secondary structure									.	.	.		S	S																	T	T								.	.		G	G	G						T	T	T						S		S	S		G	G	G	G	S		B		T	T	S		B					S
Template Predicted Secondary structure									.	.	.																													.	.
Template SS confidence
		1	.	.	.	.	.	.				.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
																		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	A	K	H	I	H	A	L	S	K	W	L	Q	E	Y	Q	P	D	I	V	I	C	I	D	V	I	S	C	L	F	A	A	K	A	R	K	K	S	G	I	D	M	P	V	F	S	W	P	H	F	S	L	D	H	K	K	H	A	E	Y	I	T	C	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	P	V	A	Q	A	R	F	T	G	R	W	F	A	R	M	A	A	S	S	L	P	R	M	L	D	F	S	R	A	W	R	P	D	L	I	V	G	G	T	M	S	Y	V	A	P	L	L	A	L	H	L	G	V	P	H	A	R	Q	T	W	D	A	V	D	A	D	G	I	H	P	G	A	D	A	E	L	R	P	E
Template Known Secondary structure		S																																	S						T	T		T										T								S	S	S				T	T	T								T
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
														133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	D	Y	H	L	A	I	S	S	G	I	K	Q	Q	M	I	N	R	G	V	A	E	S	T	I	N	V	I	F	N	P	V	E	T	K	D	S	V	I	P	A	P	E	E	G	E	T	A	T	F	I	Y	V	G	R	M	K	F	E	G	Q	K	R	V	K	D	L	L	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.
Template Conservation																										.	.	.	.	.
Template Sequence		L	S	E	L	G	L	E	R	L	P	A	P	D	L	F	I	D	I	C	P	P	S	L	R	.	.	.	.	.	P	A	N	A	A	P	A	R	M	M	R	H	V	A	T	S	R	Q	C	P	L	E	P	W	M	Y	T	R	D	T	R	Q	R	V	L	V	T	S	G	D	R	N	F	D	F	L	R	G	L	A	K
Template Known Secondary structure					T	T		S	S					S						S		G	G	G	S	.	.	.	.	.		S	S																				G	G	G	G				S	S
Template Predicted Secondary structure																										.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.						180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	S	Q	A	K	G	N	W	K	L	H	V	L	G	D	G	S	D	F	E	K	C	Q	A	Y	G	R	E	L	N	I	D	D	R	I	V	W	Y	G	W	Q	Q	Y	P	W	E	L	V	Q	Q	D	I	E	K	V	S	A	L	L	L	T	S	S	F	E	G	F	P	M	T	L	L	E	A	L	S	W	G	I
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.
Template Sequence		D	L	V	R	W	D	V	E	L	I	V	A	A	P	D	T	V	A	E	A	L	R	A	E	V	P	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	V	G	W	T	P	L	D	V	V	A	P	T	C	D	L	L	V	H	.	.	.	.	H	A	G	G	V	S	T	L	T	G	L	S	A	G	V
Template Known Secondary structure						T	T																				T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S								G	G	G		S					.	.	.	.			S		S									T
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.															.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.					.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		281	.	.	.	.	.	.	.	.	290					.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.			.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.			.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure												.	.	.	.																			.	.																					.	.
Query SS confidence												.	.	.	.																			.	.																					.	.
Query Sequence		P	C	I	S	A	D	C	V	S	G	.	.	.	.	P	A	D	I	I	Q	P	D	V	N	G	H	L	Y	Q	P	G	D	.	.	I	A	G	F	V	T	L	L	N	K	Y	I	A	G	E	I	H	I	E	H	.	.	E	K	I	P	A	S	I	D	E	F	Y	Q	S	K	Y	Y	D	R	L	H	K	V	I	I
Query Conservation												.	.	.	.																			.	.																					.	.
Alig confidence								.				.	.	.	.																			.	.																					.	.
Template Conservation								.
Template Sequence		P	Q	L	L	I	P	.	K	G	S	V	L	E	A	P	A	R	R	V	A	D	Y	G	A	A	I	A	L	L	P	G	E	D	S	T	E	A	I	A	D	S	C	Q	E	L	Q	A	K	D	T	Y	A	R	R	A	Q	D	L	S	R	E	I	S	G	M	P	L	P	A	T	V	V	T	A	L	E	Q	L	A	H
Template Known Secondary structure								.		S														T	S						T	T	T																																T	S
Template Predicted Secondary structure								.
Template SS confidence
		301	.	.	.	.	.		.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
		353
Predicted Secondary structure
Query SS confidence
Query Sequence		S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		380

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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