Job Description P27127 Confidence 96.59% Date Thu Jan 5 11:43:14 GMT 2012 Rank 54 Aligned Residues 172 % Identity 12% Template c2c4mA_ PDB info PDB header:transferase Chain: A: PDB Molecule:glycogen phosphorylase; PDBTitle: starch phosphorylase: structural studies explain oxyanion-2 dependent kinetic stability and regulatory control. Resolution 1.9 Å

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		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.					.	.	.	.	.	200	.	.	.	.	.	.	.								.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.														.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.														.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.
Query Sequence		E	T	A	T	F	I	Y	V	G	R	M	K	F	E	G	Q	K	R	.	.	.	.	V	K	D	L	L	D	G	L	S	Q	A	K	G	.	.	.	.	.	.	.	N	W	K	L	H	V	L	G	D	G	S	D	F	E	K	C	Q	A	Y	G	R	E	L	N	I	D	D	R	I	.	.	.	.	.	.	.	.	.
Query Conservation																				.	.	.	.														.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.														.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	P	E	S	I	F	D	V	Q	I	K	R	L	H	E	Y	K	R	Q	L	M	N	A	L	Y	V	L	D	L	Y	F	R	I	K	E	D	G	L	T	D	I	P	A	R	T	V	I	F	G	A	K	A	A	P	G	Y	V	R	A	K	A	I	I	K	L	I	N	S	I	A	D	L	V	N	N	D	P	E	V	S
Template Known Secondary structure			T	T	S											G	G	G	T																	T	S				S	S													T	T																				T		T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		512	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.
					237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.			.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.			.	.	300	.	.	.	.
Predicted Secondary structure		.	.	.																														.	.																																	.	.								.	.	.	.	.
Query SS confidence		.	.	.																														.	.																																	.	.								.	.	.	.	.
Query Sequence		.	.	.	V	W	Y	G	W	Q	Q	Y	P	W	E	L	V	Q	Q	D	I	E	K	V	S	A	L	L	L	T	S	S	F	.	.	E	G	F	P	M	T	L	L	E	A	L	S	W	G	I	P	C	I	S	A	D	C	V	S	G	P	A	D	I	I	Q	P	.	.	D	V	N	G	H	L	Y	.	.	.	.	.
Query Conservation		.	.	.																														.	.																																	.	.								.	.	.	.	.
Alig confidence		.	.	.																														.	.																						.											.	.								.	.	.	.	.
Template Conservation																																																									.
Template Sequence		P	L	L	K	V	V	F	V	E	N	Y	N	V	S	P	A	E	H	I	L	P	A	S	D	V	S	E	Q	I	S	T	A	G	K	E	A	S	G	T	S	N	M	K	F	M	M	N	G	A	L	T	L	G	T	M	.	D	G	A	N	V	E	I	V	D	S	V	G	E	E	N	A	Y	I	F	G	A	R	V	E
Template Known Secondary structure		T	T							T	T										G	G	G		S								T	T	S		S											T	T							S	.	S	T											G	G	G	S				S			T	T
Template Predicted Secondary structure																																																									.
Template SS confidence
		592	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.		.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670
																																						305	.	.	.	.	310	.	.	.	.	.	.	.																														.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	P	G	D	I	A	G	F	V	T	L	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	Y
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	L	P	A	L	R	E	S	Y	K	P	Y	E	L	Y	E	T	V	P	G	L	K	R	A	L	D	A	L	D	N	G	T	L	N	D	N	N	S	G	L	F	Y	D	L	K	H	S	L	I	H	G	Y	G	K	D	A	S	D	T	Y	Y	V	L	G	D	F	A	D	Y	R	E	T	R	D	R	M	A	A	D	Y
Template Known Secondary structure		T							T										S	T	T							T	T	T	S	S	S	S			T	T													S			G	G	G		S		T	T
Template Predicted Secondary structure
Template SS confidence
		671	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.			.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.
Query SS confidence																			.	.
Query Sequence		I	A	G	E	I	H	I	E	H	E	K	I	P	A	S	I	D	.	.	E	F	Y	Q	S	K	Y	Y	D	R	L	H	K
Query Conservation																			.	.
Alig confidence																			.	.
Template Conservation
Template Sequence		A	S	D	P	L	G	W	A	R	M	A	W	I	N	I	C	E	S	G	R	F	S	S	D	R	T	I	R	D	Y	A	T
Template Known Secondary structure																			G	G	G	G	B
Template Predicted Secondary structure
Template SS confidence
		751	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions