Phyre 2 alignment of P27127 with c1y6gB

Job Description P27127
Confidence 89.32% Date Thu Jan 5 11:43:14 GMT 2012

Rank 70 Aligned Residues 326

% Identity 13% Template c1y6gB_

PDB info PDB header:transferase/dna Chain: B: PDB Molecule:dna alpha-glucosyltransferase; PDBTitle: alpha-glucosyltransferase in complex with udp and a 13_mer2 dna containing a hmu base at 2.8 a resolution

Resolution 2.80 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence	M	K	I	A	F	I	G	E	A	V	S	G	F	G	G	M	E	T	V	I	R	D	V	I	T	T	F	R	Q	Q	H	I	Q	S	E	M	F	F	F	C	R	N	D	K	M	D	K	G	W	L	E	G	I	K	Y	S	C	S	F	S	N	I	R	L	G	F	L	R	R	A	K	H	I	H	A	L	S	K	W	L
Query Conservation
Alig confidence																																																													.	.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.	.
Template Sequence	M	R	I	C	I	F	M	A	R	G	L	E	G	C	G	V	T	K	F	S	L	E	Q	R	D	W	F	I	K	N	G	H	E	V	T	L	V	Y	A	K	D	K	S	F	T	R	T	S	S	H	D	H	K	S	F	S	I	P	V	I	.	.	.	.	.	.	.	.	L	A	K	E	Y	D	K	A	L	K	L	V
Template Known Secondary structure								T	T				S	S																T	T									T	T	S			T	T	S	S	S	S			T	T	T						.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.	.
Template SS confidence
	1001	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060									.	.	.	.	.	.	.	.	.	1070	.	.

	81	.	.	.	.	.	.	.	.	90	.	.	.	.	.								.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.				.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140				.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.																														.	.	.																	.	.	.
Query SS confidence																.	.	.	.	.	.	.																														.	.	.																	.	.	.
Query Sequence	Q	E	Y	Q	P	D	I	V	I	C	I	D	V	I	S	.	.	.	.	.	.	.	C	L	F	A	A	K	A	R	K	K	S	G	I	D	M	P	V	F	S	W	P	H	F	S	L	D	H	K	K	.	.	.	H	A	E	Y	I	T	C	A	D	Y	H	L	A	I	S	S	.	.	.	G	I	K	Q	Q	M	I
Query Conservation																.	.	.	.	.	.	.																														.	.	.																	.	.	.
Alig confidence																.	.	.	.	.	.	.																														.	.	.																	.	.	.
Template Conservation
Template Sequence	N	D	C	D	I	L	I	I	N	S	V	P	A	T	S	V	Q	E	A	T	I	N	N	Y	K	K	L	L	D	N	I	K	P	S	I	R	V	V	V	Y	Q	H	D	H	S	V	L	S	L	R	R	N	L	G	L	E	E	T	V	R	R	A	D	V	I	F	S	H	S	D	N	G	D	F	N	K	V	L	M	K
Template Known Secondary structure	T	S	S	S									B	T	T	S														S	S		S	S	S										S					T	T	B	S	S									S					S		T	T	S	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
	1073	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.

	148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																																								.																																					.	.	.	.
Query SS confidence																																								.																																					.	.	.	.
Query Sequence	N	R	G	V	A	E	S	T	I	N	V	I	F	N	P	V	E	T	K	D	S	V	I	P	A	P	E	E	G	E	T	A	T	F	I	Y	V	G	R	.	M	K	F	E	G	Q	K	R	V	K	D	L	L	D	G	L	S	Q	A	K	G	N	W	K	L	H	V	L	G	D	G	S	D	F	E	K	.	.	.	.
Query Conservation																																								.																																					.	.	.	.
Alig confidence																																								.																																					.	.	.	.
Template Conservation
Template Sequence	E	W	Y	P	E	A	P	T	V	Y	N	F	Q	P	P	M	D	I	V	K	V	R	S	T	Y	W	K	D	V	S	E	I	N	M	N	I	N	R	W	I	G	R	T	T	T	W	K	G	F	Y	Q	M	F	D	F	H	E	K	F	L	K	P	A	G	K	S	T	V	M	E	G	L	E	R	S	P	A	F	I	A
Template Known Secondary structure			S													B													G	G	G												S	S	G	G	G												T	T	G	G	G	T												T
Template Predicted Secondary structure
Template SS confidence
	1153	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.

												223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.							.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	C	Q	A	Y	G	R	E	L	N	I	D	D	R	I	V	W	Y	G	W	Q	Q	Y	P	W	E	L	V	Q	Q	D	I	E	K	V	S	A	L	L	L	T	S	S	F	E	.	.	.	.	.	.	G	F	P	M	T	L	L	E	A	L	S	W	G	I	P	C	I	S	A
Query Conservation	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.
Template Conservation
Template Sequence	I	K	E	K	G	I	P	Y	E	Y	Y	G	N	R	E	I	D	K	M	N	L	A	P	N	Q	P	A	Q	I	L	D	C	Y	I	N	S	E	M	L	E	R	M	S	K	S	G	F	G	Y	Q	L	S	K	L	N	Q	K	Y	L	Q	R	S	L	E	Y	T	H	L	E	L	G	A	C	G	T	I	P	V	F	W
Template Known Secondary structure			T	T	T								T	T	S	G	G	G				S	S	S							S													T												G	G	G		S	S												T	T	S					B
Template Predicted Secondary structure
Template SS confidence
	1243	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.

	286	.	.	.								290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.
Query Sequence	D	C	V	S	.	.	.	.	.	.	.	G	P	A	D	I	I	Q	P	D	V	N	G	H	L	Y	Q	P	G	D	I	A	G	F	V	T	L	L	N	K	Y	I	A	G	E	I	H	I	E	H	E	K	I	P	A	S
Query Conservation					.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.
Template Conservation
Template Sequence	K	S	T	G	E	N	L	K	F	R	V	D	N	T	P	L	T	S	H	D	S	G	I	I	W	F	D	E	N	D	M	E	S	T	F	E	R	I	K	E	L	S	S	D	R	A	L	Y	D	R	E	R	E	K	A	Y
Template Known Secondary structure								B		S	S	S			B	S	S	S	S							B		S	S	S													S
Template Predicted Secondary structure
Template SS confidence
	1323	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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