Phyre 2 alignment of P06715 with d1n4wa1

Job Description P06715
Confidence 99.39% Date Thu Jan 5 10:59:22 GMT 2012

Rank 205 Aligned Residues 313

% Identity 15% Template d1n4wa1

SCOP info FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain FAD-linked reductases, N-terminal domain

Resolution 0.92

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	H	Y	D	Y	I	A	I	G	G	G	S	G	G	I	A	S	I	N	R	A	A	M	Y	G	Q	K	C	A	L	I	E	A	K	E	L	G	G	T	C	V	N	V	G	C	V	P	K	K	V	M	W	H	A	A	Q	I	R	E	A	I	H	M	Y	G	P	D	Y	G	F	D	T	T	I	N	K	F	N	W	E	T
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.
Template Sequence	Y	V	P	A	V	V	I	G	T	G	Y	G	A	A	V	S	A	L	R	L	G	E	A	G	V	Q	T	L	M	L	E	M	G	Q	L	.	.	.	.	.	.	.	.	.	W	N	Q	P	G	P	D	G	N	I	F	C	G	M	L	N	P	D	K	R	S	S	W	F	K	N	R	T	E	A	P	L	G	S	F	L
Template Known Secondary structure										S													T	T								S	S			.	.	.	.	.	.	.	.	.						T	T	S	S	S	S			T	T	S			G	G	G	S	B	S		S	B					T	T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.
Template SS confidence
	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.										.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80

	84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																												.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.
Query Sequence	L	I	A	S	R	T	A	Y	I	D	R	I	H	T	S	Y	E	N	V	L	G	K	N	N	V	D	V	I	K	G	F	A	R	F	V	D	A	K	T	L	E	V	N	G	E	T	I	T	A	D	H	I	L	I	A	T	G	G	R	P	S	H	P	D	I	P	G	V	E	Y	G	I	D	S	D	.	.	.	.	.
Query Conservation																																																																												.	.	.	.	.
Alig confidence																																																																												.	.	.	.	.
Template Conservation
Template Sequence	W	L	D	V	V	N	R	N	I	D	P	Y	A	G	V	L	D	R	V	N	Y	D	Q	M	S	V	Y	V	G	R	G	V	G	G	G	S	L	V	N	G	G	M	A	V	E	P	K	R	S	Y	F	E	E	I	L	P	R	V	D	S	S	E	M	Y	D	R	Y	F	P	R	A	N	S	M	L	R	V	N	H	I
Template Known Secondary structure			G	G	G			B					B		S							S	S								S	T	T	G	G	G	G	T	S			B														T	T	S								T										T		B
Template Predicted Secondary structure
Template SS confidence
	81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160

																	159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	F	F	A	L	P	A	L	P	E	R	V	A	V	V	G	A	G	Y	I	A	V	E	L	A	G	V	I	N	G	L	G	A	K	T	H	L	F	V	R	K	H	A	P	L	R	S	F	D	P	M	I	S	E	T	L	V	E	V	M	N	A	E	G
Query Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	D	T	K	W	F	E	D	T	E	W	Y	K	F	A	R	V	S	R	E	Q	A	G	K	A	G	L	G	T	V	F	V	P	N	V	Y	D	F	G	Y	M	Q	R	E	A	A	G	E	V	P	K	S	A	L	A	T	E	V	I	Y	G	N	N	H	G	K	Q	S	L	D	K	T	Y	L	A	A	A	L	G	T	G
Template Known Secondary structure									G	G	G													T	T								B	S	B										T	T	S	S			S	G	G	G	T		S	T	T			S	S	S	B			T	T	T	T								T	T
Template Predicted Secondary structure
Template SS confidence
	161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240

		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.										.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.					.	.	.	.	.	280	.	.	.
Predicted Secondary structure	.																										.	.	.	.	.	.	.	.	.																												.	.	.	.										.	.	.	.	.
Query SS confidence	.																										.	.	.	.	.	.	.	.	.																												.	.	.	.										.	.	.	.	.
Query Sequence	.	P	Q	L	H	T	N	A	I	P	K	A	V	V	K	N	T	D	G	S	L	T	L	E	L	E	.	.	.	.	.	.	.	.	.	D	G	R	S	E	T	V	D	C	L	I	W	A	I	G	R	E	P	A	N	D	N	I	N	L	E	A	.	.	.	.	A	G	V	K	T	N	E	K	G	.	.	.	.	.
Query Conservation	.																										.	.	.	.	.	.	.	.	.																												.	.	.	.										.	.	.	.	.
Alig confidence	.																										.	.	.	.	.	.	.	.	.																												.	.	.	.										.	.	.	.	.
Template Conservation
Template Sequence	K	V	T	I	Q	T	L	H	Q	V	K	T	I	R	Q	T	K	D	G	G	Y	A	L	T	V	E	Q	K	D	T	D	G	K	L	L	A	T	K	E	I	S	C	R	Y	L	F	L	G	A	G	S	L	G	S	T	E	L	L	V	R	A	R	D	T	G	T	L	P	N	L	N	S	E	V	G	A	G	W	G	C
Template Known Secondary structure	S						S										T	T	S	S										T	T																		S															T	T	S	S	T	T			T	T	T	T
Template Predicted Secondary structure
Template SS confidence
	241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320

			284	.	.	.	.	.	290	.	.	.		.	.	.	.	.	.	300	.	.	.	.						.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure	.	.											.												.	.	.	.	.
Query SS confidence	.	.											.												.	.	.	.	.
Query Sequence	.	.	Y	I	V	V	D	K	Y	Q	N	T	.	N	I	E	G	I	Y	A	V	G	D	N	.	.	.	.	.	T	G	A	V	E	L	T	P	V	A	V	A	A	G	R	R	L	S	E	R	L	F
Query Conservation	.	.											.												.	.	.	.	.
Alig confidence	.	.											.									.			.	.	.	.	.
Template Conservation																						.
Template Sequence	V	L	G	K	A	T	D	D	Y	G	R	V	A	G	Y	K	N	L	Y	V	T	.	D	G	S	L	I	P	G	S	V	G	V	N	P	F	V	T	I	T	A	L	A	E	R	N	V	E	R	I	I
Template Known Secondary structure		T	T	T	T	B		T	T	S	B	B	T	T		S	S					.	S	G	G	G	S		S			S	S		S
Template Predicted Secondary structure																						.
Template SS confidence
	453	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.		.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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