Job Description P06715 Confidence 99.25% Date Thu Jan 5 10:59:22 GMT 2012 Rank 230 Aligned Residues 205 % Identity 11% Template c3pvcA_ PDB info PDB header:oxidoreductase, transferase Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis PDBTitle: crystal structure of apo mnmc from yersinia pestis Resolution 2.31 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	T	K	H	Y	D	Y	I	A	I	G	G	G	S	G	G	I	A	S	I	N	R	A	A	M	Y	G	Q	K	C	A	L	I	E	A	K	E	L	G	G	T	C	V	N	V	G	C	V	P	K	K	V	M	W	H	A	A	Q	I	R	E	A	I	H	M	Y	G	P	D	Y	G	F	D	T	T	I	N	K	F	N
Query Conservation
Alig confidence																																																																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	T	R	C	D	D	I	A	I	I	G	G	G	I	V	S	A	L	T	A	L	A	L	Q	R	R	G	A	V	V	T	L	Y	C	A	D	A	Q	P	A	Q	G	A	S	G	N	R	Q	G	A	L	Y	P	L	L	N	G	K	N	D	A	L	E	T	F	F	T	S	A	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S			S	S							S												T	T	T								S	S	S	S	T	T		S	G	G	G		S										S	S		S										.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		W	E	T	L	I	A	S	R	T	A	Y	I	D	R	I	H	T	S	Y	E	N	V	L	G	K	N	N	V	D	V	I	K	G	F	A	R	F	V	D	A	K	T	L	E	V	N	G	E	T	I	T	A	D	H	I	L	I	A	T	G	G	R	P	S	H	P	D	I	P	G	V	E	Y	G	I	D	S	D	G	F
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	T	F	A	R	R	Q	Y	D	Q	L	L	E	Q	G	I	A	F	D	H	Q	W	C	G	V	S	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	F	D	D	K	S	R
Template Known Secondary structure															T	T														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.																																														.	.	360	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	L	P	A	L	P	E	R	V	A	V	V	G	A	G	Y	I	A	V	E	L	A	G	V	I	N	G	L	G	A	K	T	H	L	F	V	R	K	H	A	P	L	R	S	F	D	P	M	I	S	E	T	L	V	E	V	M	N	A	E	G	P	Q	L	H	T	N	A	I	P	K	A	V	V	K	N	T	D	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	K	I	E	K	X	L	H	T	Q	W	P	V	E	F	A	E	A	X	S	R	E	Q	L	S	E	L	A	G	L	D	C	A	H	D	G	I	H	Y	P	A	G	G	W	L	C	P	S	D	L	T	H	A	L	X	X	L	A	Q	Q	N	G	X	T	C	H	Y	Q	H	E	L	Q	R	L	K	R	I	D	S	Q
Template Known Secondary structure								T	T	S				T	T	T														S	S			S	S						T	T																				T	T						S										S	S	S
Template Predicted Secondary structure
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	T	L	E	L	E	D	G	R	S	E	T	V	D	C	L	I	W	A	I	G
Query Conservation
Alig confidence			.
Template Conservation			.
Template Sequence		W	.	Q	L	T	F	G	S	Q	A	A	K	H	H	A	T	V	I	L	A	T	G
Template Known Secondary structure			.													S							G
Template Predicted Secondary structure			.
Template SS confidence
		445		.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions