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Job DescriptionP06715
Confidence100.00%DateThu Jan 5 10:59:22 GMT 2012
Rank32Aligned Residues416
% Identity22%Templatec3ntaA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide PDBTitle: structure of the shewanella loihica pv-4 nadh-dependent persulfide2 reductase
Resolution2.01 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20....... ..30.........40.........50.........60.........70.........
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Query Sequence  TKHYDYIAIGGGSGGIASINRAAMYG. . QKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKF
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Template Sequence  XKK. . ILIIGGVAGGASAAARARRLSETAEIIXFERGEYVSFAN. . . . . . . . . . . . . . . . CGLPYHISGEIAQRSALVLQ
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STT
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SSS
SSB
G................GGTSSS

GGGGB

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   1.. ......10.........20.........30.........40.. .......50.........60..
 
   80.........90.........100.........110.........120.........130.........140.........150.........
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Query Sequence  NWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVNGETITADHILIATGGRPSHPDIPGVEYGIDSDG
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Template Sequence  TPESFKARF. . . . . . . . . NVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSL
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TTTTTTTTT


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TT

STT

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   63......70. ........80.........90.........100.........110.........120.........130...
 
   160...... ...170.........180.........190.........200.........210.........220.........
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Query Sequence  FFALPAL. . . . . . . . . . PERVAVVGAGYIAVELAGVINGLGAKTHLFVRKHAPLRSFDPMISETLVEVMNAEGPQLHTNA
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Template Sequence  RNIPDXDRILQTIQXNNVEHATVVGGGFIGLEXXESLHHLGIKTTLLELADQVXTPVDREXAGFAHQAIRDQGVDLRLGT
Template Known Secondary structure  SSTT
S

STT

SSSSS
SSS
TT

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   134.....140.........150.........160.........170.........180.........190.........200.........210...
 
   230.........240.. .......250.........260.........270.........280.........290.
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Query Sequence  IPKAVVKNTDGSL. . . . . . . . . . . . . . . . . . TLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQ
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Template Sequence  ALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIXAIGVRPETQL. . ARDAGLAIGELGGIKVNAXX
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TTTT


TT

TT
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..TT

B
TTSSB


TT
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   214.....220.........230.........240.........250.........260.........270. ........280.........290.
 
   292.......300........ .310.........320.........330.........340.........350.........360.
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Query Sequence  NTNIEGIYAVGDNTGAV. . . . . . . . . . ELTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTVVFSHPPIGTVGLTEPQARE
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Template Sequence  QTSDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRXAADNXFG. REERYQGTQGTAICKVFDLAVGATGKNEKQLKQ
Template Known Secondary structure  B
SSTT
STTB
BTTT





TT.






B


TT

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   292.......300.........310.........320.........330....... ..340.........350.........360.........370
 
   362.......370.........380.........390.........400.........410.... .....420.........430.........
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Query Sequence  QYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMDE. MLQGFAVALKMGATKKDFDNTVAIH.
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Template Sequence  AGIAFEKVYVHTASHASYYP. . . GAEVVSFKLLFDPVKGTIFGAQAVGKDGIDKRIDVXAVAQRAGXTVEQLQHLELSYA
Template Known Secondary structure  TT


SS
TTST...T


TTT

SSSTT

TT





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   371........380.........390 .........400.........410.........420.........430.........440.......
 
   440.........450
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Query Sequence  PTAAEEFVTMR
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Template Sequence  PPYGSAKDVIN
Template Known Secondary structure  TTT

SS
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   448.450........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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