Job Description P06715 Confidence 99.97% Date Thu Jan 5 10:59:22 GMT 2012 Rank 59 Aligned Residues 308 % Identity 18% Template c3kpgA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:sulfide-quinone reductase, putative; PDBTitle: crystal structure of sulfide:quinone oxidoreductase from2 acidithiobacillus ferrooxidans in complex with decylubiquinone Resolution 2.30 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.				.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.
Query SS confidence																												.	.	.
Query Sequence		M	T	K	H	Y	D	Y	I	A	I	G	G	G	S	G	G	I	A	S	I	N	R	A	A	M	Y	.	.	.	G	Q	K	C	A	L	I	E	A	K	E	L	G	G	T	C	V	N	V	G	C	V	P	K	K	V	M	W	H	A	A	Q	I	R	E	A	I	H	M	Y	G	P	D	Y	G	F	D	T	T	I	N
Query Conservation																												.	.	.
Alig confidence					.	.	.																					.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	A	H	.	.	.	V	V	I	L	G	A	G	T	G	G	M	P	A	A	Y	E	M	K	E	A	L	G	S	G	H	E	V	T	L	I	S	A	N	D	Y	F	Q	F	V	P	S	N	P	W	V	G	V	G	W	K	E	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					.	.	.							S	T	T														T	T	S							S	S	S					G	G	G							T	S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure					.	.	.																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.				.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.				.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																																			.	.	.
Query SS confidence																																																			.	.	.
Query Sequence		K	F	N	W	E	T	L	I	A	S	R	T	A	Y	I	D	R	I	H	T	S	Y	E	N	V	L	G	K	N	N	V	D	V	I	K	G	F	A	R	F	V	D	A	K	T	L	E	V	N	.	.	.	G	E	T	I	T	A	D	H	I	L	I	A	T	G	G	R	P	S	H	P	D	I	P	G	V	E	Y	G
Query Conservation																																																			.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	D	I	A	F	P	I	R	H	Y	V	E	R	K	G	I	H	F	I	A	Q	S	A	E	Q	I	D	A	E	A	Q	N	I	T	L	A	D	G	N	T	V	H	Y	D	Y	L	M	I	A	T	G	P	K	L	A	F	E	N	V	P	G	S	D	P	H
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													T	T	T													T	T	T	T					T	T	S						S												G	G	G	S	T	T		S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																	56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
		155	.															.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190																		.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	D	G	F	F	A	L	P	A	L	P	E	R	V	A	V	V	G	A	G	Y	I	A	V	E	L	A	G	V	I	N	G	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K	T	H	L	F	V	R	K	H	A	P	L
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	G	P	V	Q	S	I	C	T	V	D	H	A	E	R	A	F	A	E	Y	Q	A	L	L	R	E	P	G	P	I	V	I	G	A	M	A	G	A	S	C	F	G	P	A	Y	E	Y	A	M	I	V	A	S	D	L	K	K	R	G	M	R	D	K	I	P	S	F	T	F	I	T	S	E	P	Y	I	G	H	L	G
Template Known Secondary structure		T	S	S					S	S																	S										T	T																						T		G	G	G		S							S	S	S	S	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.						.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.
Query Sequence		R	S	F	D	P	M	I	S	E	T	L	V	E	V	M	N	A	E	G	P	Q	L	H	T	N	A	I	P	K	A	V	V	K	N	T	D	G	S	L	T	L	E	L	E	D	G	R	S	.	.	.	.	.	E	T	V	D	C	L	I	W	A	I	G	R	E	P	A	N	D	N	I	N	L	E	A	A	G	V	K
Query Conservation																																																		.	.	.	.	.
Alig confidence																																	.																	.	.	.	.	.																			.	.	.
Template Conservation																																	.																																								.	.	.
Template Sequence		I	Q	G	V	G	D	S	K	G	I	L	T	K	G	L	K	E	E	G	I	E	A	Y	T	N	C	K	V	T	K	V	.	E	D	N	K	M	Y	V	T	Q	V	D	E	K	G	E	T	I	K	E	M	V	L	P	V	K	F	G	M	M	I	P	A	F	K	G	V	P	A	V	.	.	.	A	G	V	E	G	L
Template Known Secondary structure		T	T			T	T												T	T						S							.		T	T									T	T	S											S															.	.	.		T	S	T	T	T
Template Predicted Secondary structure																																	.																																								.	.	.
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270				.	.	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.		.	.	.	.	.	.	.	300	.	.	.	.	.	.													.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.					.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure																.															.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Query SS confidence																.															.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Query Sequence		T	N	E	K	G	Y	I	V	V	D	K	Y	Q	N	.	T	N	I	E	G	I	Y	A	V	G	D	N	T	G	.	.	.	.	.	.	.	.	.	.	.	.	A	V	E	L	T	P	V	A	V	A	A	G	R	R	L	S	E	R	L	F	.	.	.	.	N	N	K	P	D	E	H	L	D	Y	S	N	I	P	T
Query Conservation																.															.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Alig confidence																.															.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Template Conservation
Template Sequence		C	N	P	G	G	F	V	L	V	D	E	H	Q	R	S	K	K	Y	A	N	I	F	A	A	G	I	A	I	A	I	P	P	V	E	T	T	P	V	P	T	G	A	P	K	T	G	Y	M	I	E	S	M	V	S	A	A	V	H	N	I	K	A	D	L	E	G	R	K	G	E	Q	T	M	G	T	W	N	A	V	C
Template Known Secondary structure		B		T	T	S		B		B		T	T	S	B	B	S	S		T	T					G	G	G	B					S				S	S																										T	T	T									S
Template Predicted Secondary structure
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
		342	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	F	S	H	P	P	I	G	T	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	A	D	M	G	D	R	G	A	A	F
Template Known Secondary structure						S	S
Template Predicted Secondary structure
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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