Job Description P06715 Confidence 99.72% Date Thu Jan 5 10:59:22 GMT 2012 Rank 149 Aligned Residues 266 % Identity 9% Template c3cpiH_ PDB info PDB header:protein transport Chain: H: PDB Molecule:rab gdp-dissociation inhibitor; PDBTitle: crystal structure of yeast rab-gdi Resolution 2.30 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60						.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.
Query Sequence		M	T	K	H	Y	D	Y	I	A	I	G	G	G	S	G	G	I	A	S	I	N	R	A	A	M	Y	G	Q	K	C	A	L	I	E	A	K	E	L	G	G	T	C	V	N	V	G	C	V	P	K	K	V	M	W	H	A	A	Q	I	R	.	.	.	.	.	E	A	I	H	M	Y	G	P	D	Y	G	F	D	T	T
Query Conservation																																																														.	.	.	.	.
Alig confidence																																																														.	.	.	.	.
Template Conservation
Template Sequence		I	D	T	D	Y	D	V	I	V	L	G	T	G	I	T	E	C	I	L	S	G	L	L	S	V	D	G	K	K	V	L	H	I	D	K	Q	D	H	Y	G	G	E	A	A	S	V	T	L	S	Q	L	Y	E	K	F	K	Q	N	P	I	S	K	E	E	R	E	S	K	F	G	K	D	R	D	W	N	V	D	L	I
Template Known Secondary structure					B		S							S													T	T								S	S	S	S	S		T	T	S														S	S											T			G	G	G					S	S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.																							.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	N	K	F	N	W	E	T	L	I	A	S	R	T	A	Y	I	D	R	I	H	T	S	Y	E	N	V	L	G	K	N	N	V	D	V	I	K	G	F	A	R	F	V	D	A	K	T	L	E	V	N	G	E	T	I	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D
Query Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	K	F	L	M	A	N	G	E	L	T	N	I	L	I	H	T	D	V	T	R	Y	V	D	F	K	Q	V	S	G	S	Y	V	F	K	Q	G	K	I	Y	K	V	P	A	N	E	I	E	A	I	S	S	P	L	M	G	I	F	E	K	R	R	M	K	K	F	L	E	W	I	S	S	Y	K	E	D	D	L	S	T
Template Known Secondary structure				B			T	T	S										T	G	G	G	S							S							T	T								S								T	T	S																			B	T	T	B	G	G	G
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	I	L	I	A	T	G	G	R	P	S	H	P	D	I	P	G	V	E	Y	G	I	D	S	D	G	F	F	A	L	P	A	L	P	E	R	V	A	V	V	G	A	G	Y	I	A	V	E	L	A	G	V	I	N	G	L	G	A	K	T	H	L	F	V	R	K	H	A	P	L	R	S	F	D	P	M	I	S	E	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	Q	G	L	D	L	D	K	N	T	M	D	E	V	Y	Y	K	F	G	L	G	N	S	T	K	E	F	I	G	H	A	M	A	L	W	T	N	D	D	Y	L	Q	Q	P	A	R	P	S	F	E	R	I	L	L	Y	C	Q	S	V	A	R	Y	G	K	S	P	Y	L	Y	P	M	Y	G	L	G	E	L	P	Q	G
Template Known Secondary structure		G	T	T			T	T	T	S	B									T													T	S			S	S	S	G	G	G	G	S	B																			S	S		S					T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		L	V	E	V	M	N	A	E	G	P	Q	L	H	T	N	A	I	P	K	A	V	V	K	N	.	T	D	G	S	L	T	L	E	L	E	D	G	R	S	E	T	V	D	C	L	I	W	A	I	G	R	E	P	A
Query Conservation																										.
Alig confidence																										.
Template Conservation
Template Sequence		F	A	R	L	S	A	I	Y	G	G	T	Y	M	L	D	T	P	I	D	E	V	L	Y	K	K	D	T	G	K	F	E	G	V	K	T	K	L	G	T	F	K	A	P	L	V	I	A	D	P	T	Y	F	P	E
Template Known Secondary structure									T	T						S										T	T	T									T	T						S						G	G	G		G	G
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions