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Job DescriptionP06715
Confidence99.76%DateThu Jan 5 10:59:22 GMT 2012
Rank139Aligned Residues216
% Identity20%Templatec3cesB_
PDB info PDB header:rna binding proteinChain: B: PDB Molecule:trna uridine 5-carboxymethylaminomethyl modification enzyme PDBTitle: crystal structure of e.coli mnmg (gida), a highly-conserved trna2 modifying enzyme
Resolution2.41 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  TKHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNW
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Template Sequence  PDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQM. . SCNPAIGGIGKGHLVKEVDALGGL. . . . . . . . . . . .
Template Known Secondary structure  SS

S

STT

S
GGGTT

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S
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   4.....10.........20.........30.........40..... ....50.........60.........
 
   82.......90.........100.........110.........120.........130.........140.........150.........160.
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Query Sequence  ETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVNGETITADHILIATGGRPSHPDIPGVEYGIDSDGFF
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Template Sequence  . . . . . . MAKAIDQAGIQFRILNASKGPAVRATRAQAD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ......STTS
TTS

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   70.........80.........90.........100
 
   162.......170.........180.........190.........200.........210.........220.........230.........240.
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Query Sequence  ALPALPERVAVVGAGYIAVELAGVINGLGAKTHLFVRKHAPLRSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGS
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRV
Template Known Secondary structure  .............................................T
TT

SSSB
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   101........110.........120.........130.....
 
   242.......250.........260.. .......270.........280..
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Query Sequence  LTLELEDGRSETVDCLIWAIG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . REPANDNINLEAAGVKTNEK. . . . . . . .
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Template Sequence  VGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGSIPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFS
Template Known Secondary structure  TTS
S

SGGG





TT



GGGS
GGGS


SS


SS
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   136...140.........150.........160.........170.........180.........190.........200.........210.....
 
  
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Template Sequence  FMGNASQHPQQVPCYITHTNEKTHDVIRSNLSIEDKVMRFADRNQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRS
Template Known Secondary structure  TT

GGGS









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S
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   229230.........240.........250.........260.........270.........280.........290.........300........
 
   283.... ..290... ......300.........310.........320......
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Query Sequence  . . . . . . . . . . . GYIVV. . . . . . . . . . DKYQNT. NIEGIYAVGDNTGAVELTPVAVAAGRRLSERLF
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Template Sequence  MQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLFFAGQINGTTG. YEEAAAQGLLAGLNAA
Template Known Secondary structure  STT
TT




GGGB
TTSBBSSSBT
GGGGT


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   328.330.........340.........350.........360.........370...... ...380.........390..
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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