Phyre 2 alignment of P06715 with c2vq7B

Job Description P06715
Confidence 99.89% Date Thu Jan 5 10:59:22 GMT 2012

Rank 112 Aligned Residues 307

% Identity 16% Template c2vq7B_

PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:flavin-containing monooxygenase; PDBTitle: bacterial flavin-containing monooxygenase in complex with2 nadp: native data

Resolution 2.60 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.							.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.																.	.	50	.	.	.	.	.	.	.	.	.	60
Predicted Secondary structure																										.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	T	K	H	Y	D	Y	I	A	I	G	G	G	S	G	G	I	A	S	I	N	R	A	A	M	Y	.	.	.	.	.	.	G	Q	K	C	A	L	I	E	A	K	E	L	G	G	T	C	V	N	V	G	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	P	K	K	V	M	W	H	A	A	Q	I	R
Query Conservation																										.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.																					.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.
Template Sequence	T	R	.	.	.	I	A	I	L	G	A	G	P	S	G	M	A	Q	L	R	A	F	Q	S	A	Q	E	K	G	A	E	I	P	E	L	V	C	F	E	K	Q	A	D	W	G	G	Q	W	N	Y	T	W	R	T	G	L	D	E	N	G	E	P	V	H	S	S	M	Y	R	Y	L	W	S	N	G	P	K	E	C	L
Template Known Secondary structure			.	.	.							S																T	T											S	S	S	S	S		G	G	G	S			S			S	B		T	T	S	S	B							T	T		B		S	S		G	G	G	S
Template Predicted Secondary structure			.	.	.
Template SS confidence
	8	.				10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.

	61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.			.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.			.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure																																							.	.																	.	.
Query SS confidence																																							.	.																	.	.
Query Sequence	E	A	I	H	M	Y	G	P	D	Y	G	F	D	T	T	I	N	K	F	N	W	E	T	L	I	A	S	R	T	A	Y	I	D	R	I	H	T	S	.	.	Y	E	N	V	L	G	K	N	N	V	D	V	I	K	G	F	.	.	A	R	F	V	D	A	K	T	L	E	V	N	G	E	T	I	T	A	D	H	I	L
Query Conservation																																							.	.																	.	.
Alig confidence																																							.	.																	.	.
Template Conservation
Template Sequence	E	F	A	D	Y	T	F	D	E	H	F	G	K	P	I	A	S	Y	P	P	R	E	V	L	W	D	Y	I	K	G	R	V	E	K	A	G	V	R	K	Y	I	R	F	N	T	A	V	R	H	V	E	F	N	E	D	S	Q	T	F	T	V	T	V	Q	D	H	T	T	D	T	I	Y	S	A	A	F	D	Y	V	V
Template Known Secondary structure		B	T	T	B							S	S				S	S		B																T		G	G	G				S										T	T	T	T									T	T	T	T								S
Template Predicted Secondary structure
Template SS confidence
	85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.

	137	.	.	140			.	.	.	.	.	.	.	.	.	150	.	.						.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.													.	.	.	.	.
Query SS confidence					.	.													.	.	.	.	.
Query Sequence	I	A	T	G	.	.	G	R	P	S	H	P	D	I	P	G	V	E	.	.	.	.	.	Y	G	I	D	S	D	G	F	F	A	L	P	A	L	P	E	R	V	A	V	V	G	A	G	Y	I	A	V	E	L	A	G	V	I	N	G	L	G	A	K	T	H	L	F	V	R	K	H	A	P	L	R	S	F	D	P	M
Query Conservation					.	.													.	.	.	.	.
Alig confidence					.	.													.	.	.	.	.
Template Conservation
Template Sequence	C	C	T	G	H	F	S	T	P	Y	V	P	E	F	E	G	F	E	K	F	G	G	R	I	L	H	A	H	D	F	R	D	A	L	E	F	K	D	K	T	V	L	L	V	G	S	S	Y	S	A	E	D	I	G	S	Q	C	Y	K	Y	G	A	K	K	L	I	S	C	Y	R	T	A	P	M	G	Y	K	W	P	E
Template Known Secondary structure					S	S	S								B	T	T	T	T			S					G	G	G				G	G	G	G	T	T								S	S													T	T		S							S	S	S								T
Template Predicted Secondary structure
Template SS confidence
	165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.

	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	S	E	T	L	V	E	V	M	N	A	E	G	P	Q	L	H	T	N	A	I	P	K	A	V	V	K	N	T	D	G	S	L	T	L	E	L	E	D	G	R	S	E	T	V	D	C	L	I	W	A	I	G	R	E	P	A	N	D	N	I	N	L	E	A	A	G	V	K	T	N	E	K	G	Y	I	V	V	D	K
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.																											.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.																											.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	W	D	E	R	P	N	L	V	R	V	D	T	E	N	.	.	.	.	.	A	Y	F	A	D	G	S	S	E	K	V	D	A	I	I	L	C	T	G	Y	I	H	H	F	P	F	.	.	L	N	D	D	L	R	L	V	T	N	N	R	L	W	P	L	N	L
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T												S	S		.	.	.	.	.				T	T	S						S													T	T	.	.	B		T	T	T						S		S	S		S	S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.																											.	.
Template SS confidence
															245	.	.	.	.	250	.	.	.	.	.	.	.	.	.						260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.			.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.

	290	.	.				.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure				.	.	.
Query SS confidence				.	.	.
Query Sequence	Y	Q	N	.	.	.	T	N	I	E	G	I	Y	A	V	G	D	N	T	G	A	V	E	L	T	P	V	A	V	A	A	G	R	R	L	S	E	R	L	F	N	N	K	P	D	E	H
Query Conservation				.	.	.
Alig confidence				.	.	.																		.
Template Conservation																								.
Template Sequence	Y	K	G	V	V	W	E	D	N	P	K	F	F	Y	I	G	M	Q	D	Q	W	Y	S	.	F	N	M	F	D	A	Q	A	W	Y	A	R	D	V	I	M	G	R	L	P	L	P	S
Template Known Secondary structure		T	T	T			T	T		T	T					S		S			S	S		.																T	T	S	S
Template Predicted Secondary structure																								.
Template SS confidence
	304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.		.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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