Job Description P06715 Confidence 100.00% Date Thu Jan 5 10:59:22 GMT 2012 Rank 50 Aligned Residues 364 % Identity 18% Template c2v3aA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:rubredoxin reductase; PDBTitle: crystal structure of rubredoxin reductase from pseudomonas2 aeruginosa. Resolution 2.4 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.			30	.	.	.	.	.	.	.	.	.	40	.			.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.													.	.
Query SS confidence																												.	.													.	.
Query Sequence		H	Y	D	Y	I	A	I	G	G	G	S	G	G	I	A	S	I	N	R	A	A	M	Y	G	Q	K	.	.	C	A	L	I	E	A	K	E	L	G	G	T	.	.	C	V	N	V	G	C	V	P	K	K	V	M	W	H	A	A	Q	I	R	E	A	I	H	M	Y	G	P	D	Y	G	F	D	T	T	I	N	K	F
Query Conservation																												.	.													.	.
Alig confidence																												.	.													.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	A	P	L	V	I	I	G	T	G	L	A	G	Y	N	L	A	R	E	W	R	K	L	D	G	E	T	P	L	L	M	I	T	A	D	D	G	R	S	Y	S	K	P	M	L	S	T	G	F	S	K	N	K	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											S												T	T		S	S	S							S	S							G	G	G	G	G	G	T	T	T	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	W	E	T	L	I	A	S	R	T	A	Y	I	D	R	I	H	T	S	Y	E	N	V	L	G	K	N	N	V	D	V	I	K	G	F	A	R	F	V	D	A	K	T	L	E	V	N	G	E	T	I	T	A	D	H	I	L	I	A	T	G	G	R	P	S	H	P	D	I	P	G	V	E	Y	G	I	D	S	D	G
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	D	G	L	A	M	A	E	P	G	A	M	A	E	Q	L	N	A	R	I	L	T	H	T	R	V	T	G	I	D	P	G	H	Q	R	I	W	I	G	E	E	E	V	R	Y	R	D	L	V	L	A	W	G	A	E	P	I	R	V	P	V	E	G	D	A	Q	D	A	L	Y	P	I	N	D	L	E	D	Y	A	R
Template Known Secondary structure		.															T	T						S								G	G	G	T					T	T						S																B	S	T	T	T	T						S	S
Template Predicted Secondary structure		.
Template SS confidence
			59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		F	F	A	L	P	A	L	P	E	R	V	A	V	V	G	A	G	Y	I	A	V	E	L	A	G	V	I	N	G	L	G	A	K	T	H	L	F	V	R	K	H	A	P	L	R	S	F	.	D	P	M	I	S	E	T	L	V	E	V	M	N	A	E	G	P	Q	L	H	T	N	A	I	P	K	A	V	V	K	N	T
Query Conservation																																																	.
Alig confidence																																																	.
Template Conservation
Template Sequence		F	R	Q	A	A	A	G	K	R	R	V	L	L	L	G	A	G	L	I	G	C	E	F	A	N	D	L	S	S	G	G	Y	Q	L	D	V	V	A	P	C	E	Q	V	M	P	G	L	L	H	P	A	A	A	K	A	V	Q	A	G	L	E	G	L	G	V	R	F	H	L	G	P	V	L	A	S	L	K	K	A	G
Template Known Secondary structure							T	T										S													T	T								S	S	S	S	S	S	T	T	T	S														T	T	T						S										T
Template Predicted Secondary structure
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.					.	.	.	.	310	.	.	.	.
Predicted Secondary structure																																																																					.	.	.	.
Query SS confidence																																																																					.	.	.	.
Query Sequence		D	G	S	L	T	L	E	L	E	D	G	R	S	E	T	V	D	C	L	I	W	A	I	G	R	E	P	A	N	D	N	I	N	L	E	A	A	G	V	K	T	N	E	K	G	Y	I	V	V	D	K	Y	Q	N	T	N	I	E	G	I	Y	A	V	G	D	N	T	.	.	.	.	G	A	V	E	L	T	P	V	A
Query Conservation																																																																					.	.	.	.
Alig confidence					.																																				.	.	.	.																									.	.	.	.
Template Conservation					.																																				.	.	.	.
Template Sequence		E	G	L	.	E	A	H	L	S	D	G	E	V	I	P	C	D	L	V	V	S	A	V	G	L	R	P	R	T	E	L	A	F	A	A	G	L	A	V	.	.	.	.	N	R	G	I	V	V	D	R	S	L	R	T	S	H	A	N	I	Y	A	L	G	D	C	A	E	V	D	G	L	N	L	L	Y	V	M	P	L
Template Known Secondary structure		T			.					T	T	S						S						S												T	T			B	.	.	.	.	S	S	S					T	T		B		S	S	T	T					G	G	G				T	T	B				S
Template Predicted Secondary structure					.																																				.	.	.	.
Template SS confidence
		218	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.					.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	A	G	R	R	L	S	E	R	L	F	N	N	K	P	D	E	H	L	D	Y	S	N	I	P	T	V	V	F	S	H	P	P	I	G	T	V	G	L	T	E	P	Q	A	R	E	Q	Y	G	D	D	Q	V	K	V	Y	K	S	S	F	T	A	M	Y	T	A	V	T	T	H	R	Q	P	C	R	M	K	L	V
Query Conservation
Alig confidence																		.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template Conservation																		.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template Sequence		M	A	C	A	R	A	L	A	Q	T	L	A	G	N	P	S	.	.	Q	V	A	Y	G	P	M	P	V	T	V	K	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	C	P	L	V	V	S	P	P	P	R	G	M	D	G	Q	W	L	V	E	G	S	G	T	D	L	.	K	V	L
Template Known Secondary structure													T	T				.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S									T	T											T	T			.
Template Predicted Secondary structure																		.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.			.	310	.	.	.	.	.	.	.	.	.	320	.																			.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.		.	350	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	V	G	S	E	E	K	I	V	G	I	H	G	I	G	F	G	M	D	E	M	L	Q	G	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	R	D	T	A	G	R	V	I	G	Y	A	L	T	G	A	A	V	N	E	K	L	A	L	N
Template Known Secondary structure					T	T	S									G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions