Job Description P06715 Confidence 100.00% Date Thu Jan 5 10:59:22 GMT 2012 Rank 24 Aligned Residues 442 % Identity 26% Template c2qaeA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrolipoyl dehydrogenase; PDBTitle: crystal structure analysis of trypanosoma cruzi lipoamide2 dehydrogenase Resolution 1.90 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80
Predicted Secondary structure																																									.																																						.
Query SS confidence																																									.																																						.
Query Sequence		K	H	Y	D	Y	I	A	I	G	G	G	S	G	G	I	A	S	I	N	R	A	A	M	Y	G	Q	K	C	A	L	I	E	A	K	E	L	G	G	T	.	C	V	N	V	G	C	V	P	K	K	V	M	W	H	A	A	Q	I	R	E	A	I	H	M	Y	G	P	D	Y	G	F	D	T	T	I	N	K	.	F	N
Query Conservation																																									.																																						.
Alig confidence																																									.																																						.
Template Conservation
Template Sequence		N	P	Y	D	V	V	V	I	G	G	G	P	G	G	Y	V	A	S	I	K	A	A	Q	L	G	M	K	T	A	C	V	E	K	R	G	A	L	G	G	T	C	L	N	V	G	C	I	P	S	K	A	L	L	H	A	T	H	L	Y	H	D	A	H	A	N	F	A	R	Y	G	L	M	G	G	E	G	V	T	M	D
Template Known Secondary structure												S													T	T								S	S	S	S	S	S							S																				T					T				G	G	G
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.						.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																															.	.	.	.	.																													.	.
Query SS confidence																																															.	.	.	.	.																													.	.
Query Sequence		W	E	T	L	I	A	S	R	T	A	Y	I	D	R	I	H	T	S	Y	E	N	V	L	G	K	N	N	V	D	V	I	K	G	F	A	R	F	V	D	A	K	T	L	E	V	.	.	.	.	.	N	G	E	T	I	T	A	D	H	I	L	I	A	T	G	G	R	P	S	H	P	D	I	P	G	V	E	Y	.	.
Query Conservation																																															.	.	.	.	.																													.	.
Alig confidence																																															.	.	.	.	.																													.	.
Template Conservation
Template Sequence		S	A	K	M	Q	Q	Q	K	E	R	A	V	K	G	L	T	G	G	V	E	Y	L	F	K	K	N	K	V	T	Y	Y	K	G	E	G	S	F	E	T	A	H	S	I	R	V	N	G	L	D	G	K	Q	E	M	L	E	T	K	K	T	I	I	A	T	G	S	E	P	T	E	L	P	F	L	P	F	D	E	K	V
Template Known Secondary structure																												T													T	T							T	T	S																					B	T	T	B				S	S	S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		G	I	D	S	D	G	F	F	A	L	P	A	L	P	E	R	V	A	V	V	G	A	G	Y	I	A	V	E	L	A	G	V	I	N	G	L	G	A	K	T	H	L	F	V	R	K	H	A	P	L	R	S	F	D	P	M	I	S	E	T	L	V	E	V	M	.	N	A	E	G	P	Q	L	H	T	N	A	I	P	K
Query Conservation																																																																			.
Alig confidence																																																																			.
Template Conservation
Template Sequence		V	L	S	S	T	G	A	L	A	L	P	R	V	P	K	T	M	V	V	I	G	G	G	V	I	G	L	E	L	G	S	V	W	A	R	L	G	A	E	V	T	V	V	E	F	A	P	R	C	A	P	T	L	D	E	D	V	T	N	A	L	V	G	A	L	A	K	N	E	K	M	K	F	M	T	S	T	K	V	V
Template Known Secondary structure										T		S	S			S								S													T	T								S	S	S	S	S	S	T	T	S																T							S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.		.	.	.	310	.
Predicted Secondary structure																																																																												.
Query SS confidence																																																																												.
Query Sequence		A	V	V	K	N	T	D	G	S	L	T	L	E	L	E	D	G	R	S	E	T	V	D	C	L	I	W	A	I	G	R	E	P	A	N	D	N	I	N	L	E	A	A	G	V	K	T	N	E	K	G	Y	I	V	V	D	K	Y	Q	N	T	N	I	E	G	I	Y	A	V	G	D	N	T	G	.	A	V	E	L	T
Query Conservation																																																																												.
Alig confidence																																																																												.
Template Conservation
Template Sequence		G	G	T	N	N	G	D	S	V	S	L	E	V	E	G	K	R	E	T	V	T	C	E	A	L	L	V	S	V	G	R	R	P	F	T	G	G	L	G	L	D	K	I	N	V	A	K	N	E	R	G	F	V	K	I	G	D	H	F	E	T	S	I	P	D	V	Y	A	I	G	D	V	V	D	K	G	P	M	L	A
Template Known Secondary structure							S	S	S															S						S							T	T	S						T			B		T	T	S		B				T	T	S	B		S	S	T	T					G	G	G	B	S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	A	V	A	A	G	R	R	L	S	E	R	L	F	N	N	K	P	D	E	H	L	D	Y	S	N	I	P	T	V	V	F	S	H	P	P	I	G	T	V	G	L	T	E	P	Q	A	R	E	Q	Y	G	D	D	Q	V	K	V	Y	K	S	S	F	T	A	M	Y	T	A	V	T	T	H	R	Q	P	C	R	M
Query Conservation
Alig confidence																				.	.																																			.	.
Template Conservation																				.	.																																			.	.
Template Sequence		H	K	A	E	D	E	G	V	A	C	A	E	I	L	A	G	K	P	.	.	G	H	V	N	Y	G	V	I	P	A	V	I	Y	T	M	P	E	V	A	S	V	G	K	S	E	D	E	L	K	K	E	G	V	A	.	.	Y	K	V	G	K	F	P	F	N	A	N	S	R	A	K	A	V	S	T	E	D	G	F	V
Template Known Secondary structure																T	T			.	.					T	T	S							S	S	S															T	T			.	.								G	G	G							T	T
Template Predicted Secondary structure																				.	.																																			.	.
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.			.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.			.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	V	C	V	G	S	E	E	K	I	V	G	I	H	G	I	G	F	G	M	D	E	M	L	Q	G	F	A	V	A	L	K	M	G	A	T	K	K	D	F	D	N	T	V	A	I	H	P	T	A	A	E	E	F	V	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	V	L	V	D	K	A	T	D	R	I	L	G	V	H	I	V	C	T	T	A	G	E	L	I	G	E	A	C	L	A	M	E	Y	G	A	S	S	E	D	V	G	R	T	C	H	A	H	P	T	M	S	E	A	L	K	E
Template Known Secondary structure							T	T	T		B									T	T														T	T		B						T	S				S	S		T
Template Predicted Secondary structure
Template SS confidence
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.