Job Description P06715 Confidence 100.00% Date Thu Jan 5 10:59:22 GMT 2012 Rank 29 Aligned Residues 444 % Identity 34% Template c2nvkX_ PDB info PDB header:oxidoreductase Chain: X: PDB Molecule:thioredoxin reductase; PDBTitle: crystal structure of thioredoxin reductase from drosophila2 melanogaster Resolution 2.40 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.											.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.
Query Sequence		H	Y	D	Y	I	A	I	G	G	G	S	G	G	I	A	S	I	N	R	A	A	M	Y	G	Q	K	C	A	L	I	E	A	K	E	L	G	G	T	C	V	N	V	G	C	V	.	.	.	.	.	.	.	.	.	.	P	K	K	V	M	W	H	A	A	Q	I	R	E	A	I	H	M	Y	G	P	D	Y	G	F	D
Query Conservation																																															.	.	.	.	.	.	.	.	.	.
Alig confidence																																															.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	Y	D	L	I	V	I	G	G	G	S	A	G	L	A	C	A	K	E	A	V	L	N	G	A	R	V	A	C	L	D	F	V	K	P	T	P	T	L	G	T	K	W	G	V	G	G	T	C	V	N	V	G	C	I	P	K	K	L	M	H	Q	A	S	L	L	G	E	A	V	H	E	A	A	A	Y	G	W	N	V
Template Known Secondary structure				S							S													T	T													T	T	T						S	S							S																					G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.					.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.
Query SS confidence																																																						.	.	.	.
Query Sequence		T	T	I	N	K	F	N	W	E	T	L	I	A	S	R	T	A	Y	I	D	R	I	H	T	S	Y	E	N	V	L	G	K	N	N	V	D	V	I	K	G	F	A	R	F	V	D	A	K	T	L	E	V	.	.	.	.	N	G	E	T	I	T	A	D	H	I	L	I	A	T	G	G	R	P	S	H	P	D	I	P
Query Conservation																																																						.	.	.	.
Alig confidence																																																						.	.	.	.
Template Conservation
Template Sequence		D	D	K	I	K	P	D	W	H	K	L	V	Q	S	V	Q	N	H	I	K	S	V	N	W	V	T	R	V	D	L	R	D	K	K	V	E	Y	I	N	G	L	G	S	F	V	D	S	H	T	L	L	A	K	L	K	S	G	E	R	T	I	T	A	Q	T	F	V	I	A	V	G	G	R	P	R	Y	P	D	I	P
Template Known Secondary structure			S																															T	T													T	T							T	T	S							S														S	S	T
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	E	Y	G	I	D	S	D	G	F	F	A	L	P	A	L	P	E	R	V	A	V	V	G	A	G	Y	I	A	V	E	L	A	G	V	I	N	G	L	G	A	K	T	H	L	F	V	R	K	H	A	P	L	R	S	F	D	P	M	I	S	E	T	L	V	E	V	M	N	A	E	G	P	Q	L	H	T	N	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	A	V	E	Y	G	I	T	S	D	D	L	F	S	L	D	R	E	P	G	K	T	L	V	V	G	A	G	Y	I	G	L	E	C	A	G	F	L	K	G	L	G	Y	E	P	T	V	M	V	R	S	I	V	L	R	G	F	D	Q	Q	M	A	E	L	V	A	A	S	M	E	E	R	G	I	P	F	L	R	K	T
Template Known Secondary structure		T						B						T	T		S	S											S													T	T								S	S		S	S	T	T	S															T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.						.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.
Query SS confidence																					.	.	.	.	.
Query Sequence		I	P	K	A	V	V	K	N	T	D	G	S	L	T	L	E	L	E	D	.	.	.	.	.	G	R	S	E	T	V	D	C	L	I	W	A	I	G	R	E	P	A	N	D	N	I	N	L	E	A	A	G	V	K	T	N	E	K	G	Y	I	V	V	D	K	Y	Q	N	T	N	I	E	G	I	Y	A	V	G	D	N
Query Conservation																					.	.	.	.	.
Alig confidence																					.	.	.	.	.																															.
Template Conservation																																																								.
Template Sequence		V	P	L	S	V	E	K	Q	D	D	G	K	L	L	V	K	Y	K	N	V	E	T	G	E	E	S	E	D	V	Y	D	T	V	L	W	A	I	G	R	K	G	L	V	D	D	L	N	L	P	N	A	G	V	T	.	V	Q	K	D	K	I	P	V	D	S	Q	E	A	T	N	V	A	N	I	Y	A	V	G	D	I
Template Known Secondary structure										T	T	S									S	S	S									S											T	T	G	G	G		G	G	G	T	T			.		S	S	S	S	B				T	T	S	B		S	S	T	T					S	T	T
Template Predicted Secondary structure																																																								.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.		.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		305		.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		T	.	G	A	V	E	L	T	P	V	A	V	A	A	G	R	R	L	S	E	R	L	F	N	N	K	P	D	E	H	L	D	Y	S	N	I	P	T	V	V	F	S	H	P	P	I	G	T	V	G	L	T	E	P	Q	A	R	E	Q	Y	G	D	D	Q	V	K	V	Y	K	S	S	F	T	A	M	Y	T	A	V	T
Query Conservation			.
Alig confidence			.																							.
Template Conservation																										.
Template Sequence		I	Y	G	K	P	E	L	T	P	V	A	V	L	A	G	R	L	L	A	R	R	L	Y	G	.	G	S	T	Q	R	M	D	Y	K	D	V	A	T	T	V	F	T	P	L	E	Y	A	C	V	G	L	S	E	E	D	A	V	K	Q	F	G	A	D	E	I	E	V	F	H	G	Y	Y	K	P	T	E	F	F	I	P
Template Known Secondary structure		B	T	T	S																				S	.									S	S							S	S	S																		G	G	G											G	G	G	T	T	T
Template Predicted Secondary structure																										.
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.		.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
		384	.	.	.	.		.	390	.	.	.	.	.	.	.	.	.		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.												.
Query SS confidence							.												.
Query Sequence		T	H	R	Q	P	.	C	R	M	K	L	V	C	V	G	S	E	.	E	K	I	V	G	I	H	G	I	G	F	G	M	D	E	M	L	Q	G	F	A	V	A	L	K	M	G	A	T	K	K	D	F	D	N	T	V	A	I	H	P	T	A	A	E	E	F	V	T	M
Query Conservation							.												.
Alig confidence							.												.
Template Conservation
Template Sequence		Q	K	S	V	R	Y	C	Y	L	K	A	V	A	E	R	H	G	D	Q	R	V	Y	G	L	H	Y	I	G	P	V	A	G	E	V	I	Q	G	F	A	A	A	L	K	S	G	L	T	I	N	T	L	I	N	T	V	G	I	H	P	T	T	A	E	E	F	T	R	L
Template Known Secondary structure		T				T	T									S	S	T	T		B									T	T														T	T		B							S				S	S		S	G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.