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Job DescriptionP06715
Confidence100.00%DateThu Jan 5 10:59:22 GMT 2012
Rank35Aligned Residues420
% Identity16%Templatec2cduB_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:nadph oxidase; PDBTitle: the crystal structure of water-forming nad(p)h oxidase from2 lactobacillus sanfranciscensis
Resolution1.8 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20...... ...30.........40.........50.........60.........70........
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Query Sequence  MTKHYDYIAIGGGSGGIASINRAAMY. . GQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINK
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Template Sequence  MK. . . . VIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSGIA. . . . . . . . . . . . . . . . . LYLGKEIKNNDPRGL
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TT

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SGGG
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   1. .......10.........20.........30.........40.... .....50.........
 
   7980.........90.........100.........110.........120.........130.........140.........150........
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Query Sequence  FNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVNGETITADHILIATGGRPSHPDIPGVEYGIDSD
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Template Sequence  FYSSPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNYNDAK
Template Known Secondary structure  BS

TT

SGGGTTTT


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S
TTTTSTT
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   61........70.........80.........90.........100.........110.........120.........130.........140
 
   159160.........170.........180.........190.........200. ........210.........220.........230.......
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Query Sequence  GFFALPALPERVAVVGAGYIAVELAGVINGLGAKTHLFVRKHA. PLRSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKN
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Template Sequence  KLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEV
Template Known Secondary structure  GGG
S

STTT
SSSSTTTTTS
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   141........150.........160.........170.........180.........190.........200.........210.........220
 
   238.240.........250.........260.........270.........280.........290.........300...... .
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Query Sequence  TDGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTG. . . . . . . . . . A
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Template Sequence  DDEI. ITKTLDGKEIKSDIAILCIGFRPNTEL. . . LKGKVAMLDNGAIITDEYMHSSNRDIFAAGDSAAVHYNPTNSNAY
Template Known Secondary structure  TT.TTS
S
S


GG...GTTTS
B
TT

B


TTSB
SSTT
GGGB
GGGT
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   221... .....230.........240.........250. ........260.........270.........280.........290......
 
   308.310.........320.........330.........340.........350.........360.........370.........380.......
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Query Sequence  VELTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQ
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Template Sequence  IPLATNAVRQGRLVGLNLTE. DKVKDMGTQSSSGLKLYGRTYVSTGINTALAKANNLKVSEVIIADNYRPEFML. . . STD
Template Known Secondary structure 


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B


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   297..300.........310...... ...320.........330.........340.........350.........360......... 370..
 
   388.390.........400.........410. ........420.........430........ .440.........
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Query Sequence  PCRMKLVCVGSEEKIVGIHGIGFG. MDEMLQGFAVALKMGATKKDFDNTVAI. HPTAAEEFVTM
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Template Sequence  EVLMSLVYDPKTRVILGGALSSMHDVSQSANVLSVCIQNKNTIDDLAMVDMLFQPQFDRPFNYL
Template Known Secondary structure 
TTT
BSS

TTT
BS




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   373......380.........390.........400.........410.........420.........430......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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