Job Description P06715 Confidence 100.00% Date Thu Jan 5 10:59:22 GMT 2012 Rank 33 Aligned Residues 423 % Identity 19% Template c2bcpA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nadh oxidase; PDBTitle: structural analysis of streptococcus pyogenes nadh oxidase:2 c44s nox with azide Resolution 2.10 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.				.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.																			.
Query SS confidence																												.	.	.																			.
Query Sequence		M	T	K	H	Y	D	Y	I	A	I	G	G	G	S	G	G	I	A	S	I	N	R	A	A	M	Y	.	.	.	G	Q	K	C	A	L	I	E	A	K	E	L	G	G	T	C	V	N	.	V	G	C	V	P	K	K	V	M	W	H	A	A	Q	I	R	E	A	I	H	M	Y	G	P	D	Y	G	F	D	T	T	I
Query Conservation																												.	.	.																			.
Alig confidence						.	.																					.	.	.																			.																																.
Template Conservation						.	.																																																																										.
Template Sequence		W	G	S	K	.	.	I	V	V	V	G	A	N	H	A	G	T	A	C	I	K	T	M	L	T	N	Y	G	D	A	N	E	I	V	V	F	D	Q	N	S	N	I	S	F	L	G	S	G	M	A	L	W	I	G	E	Q	I	A	G	P	E	G	L	F	Y	S	D	K	E	E	L	E	S	L	G	A	K	V	Y	.
Template Known Secondary structure						.	.							S															G	G	G	S							S	S	S				B		T	T							T	T	S	S	S	S	S	T	T	S	B									T	T	T					.
Template Predicted Secondary structure						.	.																																																																										.
Template SS confidence
		0	.	.	.			.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	K	F	N	W	E	T	L	I	A	S	R	T	A	Y	I	D	R	I	H	T	S	Y	E	N	V	L	G	K	N	N	V	D	V	I	K	G	F	A	R	F	V	D	A	K	T	L	E	V	N	G	E	T	I	T	A	D	H	I	L	I	A	T	G	G	R	P	S	H	P	D	I	P	G	V	E	Y	G	I	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	E	S	P	V	Q	S	I	D	Y	D	A	K	T	V	T	A	L	V	D	G	K	N	H	V	E	T	Y	D	K	L	I	F	A	T	G	S	Q	P	I	L	P	P	I	K	G	A	E	I	K	E	G	S	L	E	F	E	A	T	L	E	N	L	Q	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T								T	T	T	T						S	S	S	S							S														S		B	T			B		T	T		S	S			B	S	S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																	77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		157	.	.	160	.	.	.	.	.	.									.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.																																						.
Query SS confidence												.	.	.	.	.	.	.	.																																						.
Query Sequence		S	D	G	F	F	A	L	P	A	L	.	.	.	.	.	.	.	.	P	E	R	V	A	V	V	G	A	G	Y	I	A	V	E	L	A	G	V	I	N	G	L	G	A	K	T	H	L	F	V	R	K	H	A	P	L	.	R	S	F	D	P	M	I	S	E	T	L	V	E	V	M	N	A	E	G	P	Q	L	H	T
Query Conservation												.	.	.	.	.	.	.	.																																						.
Alig confidence												.	.	.	.	.	.	.	.																																						.
Template Conservation
Template Sequence		V	K	L	Y	Q	N	S	A	D	V	I	A	K	L	E	N	K	D	I	K	R	V	A	V	V	G	A	G	Y	I	G	V	E	L	A	E	A	F	Q	R	K	G	K	E	V	V	L	I	D	V	V	D	T	C	L	A	G	Y	Y	D	R	D	L	T	D	L	M	A	K	N	M	E	E	H	G	I	Q	L	A	F
Template Known Secondary structure			S	S											T	T		T	T										S													T	T								S	S	S	S	S	S	T	T	T	S														T	T	T
Template Predicted Secondary structure
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		N	A	I	P	K	A	V	V	K	N	T	D	G	S	L	T	L	E	L	E	D	G	R	S	E	T	V	D	C	L	I	W	A	I	G	R	E	P	A	N	D	N	I	N	L	E	A	A	G	V	K	T	N	E	K	G	Y	I	V	V	D	K	Y	Q	N	T	N	I	E	G	I	Y	A	V	G	D	N	T	G	.
Query Conservation																																																																																	.
Alig confidence										.	.																																		.	.	.																																		.
Template Conservation										.	.																																		.	.	.
Template Sequence		G	E	T	V	K	E	V	A	.	.	G	N	G	K	V	E	K	I	I	T	D	K	N	E	Y	D	V	D	M	V	I	L	A	V	G	F	R	P	N	T	T	L	G	.	.	.	N	G	K	I	D	L	F	R	N	G	A	F	L	V	N	K	R	Q	E	T	S	I	P	G	V	Y	A	I	G	D	C	A	T	I
Template Known Secondary structure		S								.	.		S	S	S							S	S						S													G	G	G	.	.	.	T	T	S	S		B		T	T	S		B				T	T		B		S	S	T	T					G	G	G	B
Template Predicted Secondary structure										.	.																																		.	.	.
Template SS confidence
		222	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.				.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
											307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	A	V	E	L	T	P	V	A	V	A	A	G	R	R	L	S	E	R	L	F	N	N	K	P	D	E	H	L	D	Y	S	N	I	P	T	V	V	F	S	H	P	P	I	G	T	V	G	L	T	E	P	Q	A	R	E	Q	Y	G	D	D	Q	V	K	V	Y	K	S	S	F	T	A
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																						.																																						.	.
Template Conservation																																.																																						.	.
Template Sequence		Y	D	N	A	T	R	D	T	N	Y	I	A	L	A	S	N	A	V	R	T	G	I	V	A	A	H	N	A	C	G	.	T	D	L	E	G	I	G	V	Q	G	S	N	G	I	S	I	Y	G	L	H	M	V	S	T	G	L	T	L	E	K	A	K	R	L	G	F	D	.	.	A	A	V	T	E	Y	T	D	N	Q
Template Known Secondary structure				T	T	T	T																							T	T	.								B									T	T																T	T			.	.										S
Template Predicted Secondary structure																																.																																						.	.
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.		.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.			.	.	.	.	.	.	370	.	.	.
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410		.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.		.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.																													.
Query SS confidence																																			.																													.
Query Sequence		M	Y	T	A	V	T	T	H	R	Q	P	C	R	M	K	L	V	C	V	G	S	E	E	K	I	V	G	I	H	G	I	G	F	.	G	M	D	E	M	L	Q	G	F	A	V	A	L	K	M	G	A	T	K	K	D	F	D	N	T	V	A	I	.	H	P	T	A	A	E	E	F	V	T	M
Query Conservation																																			.																													.
Alig confidence																																			.																													.
Template Conservation
Template Sequence		K	P	E	F	I	E	H	G	N	F	P	V	T	I	K	I	V	Y	D	K	D	S	R	R	I	L	G	A	Q	M	A	A	R	E	D	V	S	M	G	I	H	M	F	S	L	A	I	Q	E	G	V	T	I	E	K	L	A	L	T	D	I	F	F	L	P	H	F	N	K	P	Y	N	Y	I
Template Known Secondary structure		S		T	T			S	S												T	T	T		B									S	S			T	T												T		B						T	S						T	T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.