Job Description P06715 Confidence 99.79% Date Thu Jan 5 10:59:22 GMT 2012 Rank 133 Aligned Residues 265 % Identity 9% Template c1ltxR_ PDB info PDB header:transferase/protein binding Chain: R: PDB Molecule:rab escort protein 1; PDBTitle: structure of rab escort protein-1 in complex with rab2 geranylgeranyl transferase and isoprenoid Resolution 2.70 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	T	K	H	Y	D	Y	I	A	I	G	G	G	S	G	G	I	A	S	I	N	R	A	A	M	Y	G	Q	K	C	A	L	I	E	A	K	E	L	G	G	T	C	V	N	V	G	C	V	P	K	K	V	M	W	H	A	A	Q	I	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	P	S	D	F	D	V	I	V	I	G	T	G	L	P	E	S	I	I	A	A	A	C	S	R	S	G	Q	R	V	L	H	V	D	S	R	S	Y	Y	G	G	N	W	A	S	F	S	F	S	G	L	L	S	W	L	K	E	Y	Q	E	N	T	E	N	S	M	W	Q	E	Q	I	L	E	N	E	E	A	I	P	L
Template Known Secondary structure				S	B		S							S													T	T								S	S	S	S	S		G	G	G														T	T	T								G	G	G	G	S		T	T						B
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
																												61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	I	H	M	Y	G	P	D	Y	G	F	D	T	T	I	N	K	F	N	W	E	T	L	I	A	S	R	T	A	Y	I	D	R	I	H	T	S	Y	E	N	V	L	G	K	N	N	V	D	V	I	K	G	F
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	S	K	D	K	T	I	Q	H	V	E	V	F	C	Y	A	S	Q	D	K	N	R	I	T	Y	S	Q	I	I	K	E	G	R	R	F	N	I	D	L	V	S	K	L	L	Y	S	R	G	L	L	I	D	L	L	I	K	S	N	V	S	R	Y	A	E	F	K	N	I	T	R	I	L	A	F	R	E	G	T	V	E
Template Known Secondary structure			S	S													S	T	T													T	G	G	G					S	S						T	T	S										T	G	G	G	G														T	T
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.														.	.	.	.	.	.	.	180	.
Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	R	F	V	D	A	K	T	L	E	V	N	G	E	T	I	T	A	D	H	I	L	I	A	T	G	G	R	P	S	H	P	D	I	P	G	V	E	Y	G	I	D	S	D	G	F	F	A	L	P	A	L	P	E	R	V	A	V	.	.	.	.	.	.	.	.	.	.	.	.	.	V	G	A	G	Y	I	A	V	E
Query Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	V	P	C	S	R	A	D	V	F	N	S	K	Q	L	T	M	V	E	K	R	M	L	M	K	F	L	T	F	C	V	E	Y	E	E	H	P	D	E	Y	R	A	Y	E	G	T	T	F	S	E	Y	L	K	T	Q	K	L	T	P	N	L	Q	Y	F	V	L	H	S	I	A	M	T	S	T	S	C	T	V	D	G
Template Known Secondary structure						S								S	S	S																T	T	G	G	G		G	G	G	T	G	G	G	T	T	S	B								S	S											T	T	T	S						B
Template Predicted Secondary structure
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.			.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.
Query SS confidence																																																									.	.
Query Sequence		L	A	G	V	I	N	G	L	G	A	K	T	H	L	F	V	R	K	H	A	P	L	R	S	F	D	P	M	I	S	E	T	L	V	E	V	M	N	A	E	G	P	Q	L	H	T	N	A	I	P	K	A	V	V	K	.	.	N	T	D	G	S	L	T	L	E	L	E	D	G	R	S	E	T	V	D	C	L	I	W
Query Conservation																																																									.	.
Alig confidence																																																									.	.
Template Conservation
Template Sequence		L	K	A	T	K	K	F	L	Q	C	L	G	R	Y	G	N	T	P	F	L	F	P	L	Y	G	Q	G	E	L	P	Q	C	F	C	R	M	C	A	V	F	G	G	I	Y	C	L	R	H	S	V	Q	C	L	V	V	D	K	E	S	R	K	C	K	A	V	I	D	Q	F	G	Q	R	I	I	S	K	H	F	I	I
Template Known Secondary structure										T	T	T	T	S	S	S	S	S	S					T	T		T	T													T	T					T	T										T	T	T									T	T							S
Template Predicted Secondary structure
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
		260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	G	R	E	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	D	S	Y	L	S
Template Known Secondary structure			G	G	G	B
Template Predicted Secondary structure
Template SS confidence
		432	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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