Phyre 2 alignment of P06715 with c1fcdB

Job Description P06715
Confidence 99.95% Date Thu Jan 5 10:59:22 GMT 2012

Rank 83 Aligned Residues 303

% Identity 15% Template c1fcdB_

PDB info PDB header:electron transport(flavocytochrome) Chain: B: PDB Molecule:flavocytochrome c sulfide dehydrogenase (flavin- PDBTitle: the structure of flavocytochrome c sulfide dehydrogenase2 from a purple phototrophic bacterium chromatium vinosum at3 2.5 angstroms resolution

Resolution 2.53 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.
Query SS confidence																											.	.
Query Sequence	T	K	H	Y	D	Y	I	A	I	G	G	G	S	G	G	I	A	S	I	N	R	A	A	M	Y	G	.	.	Q	K	C	A	L	I	E	A	K	E	L	G	G	T	C	V	N	V	G	C	V	P	K	K	V	M	W	H	A	A	Q	I	R	E	A	I	H	M	Y	G	P	D	Y	G	F	D	T	T	I	N	K	F
Query Conservation																											.	.
Alig confidence				.	.																						.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	G	R	K	.	.	V	V	V	V	G	G	G	T	G	G	A	T	A	A	K	Y	I	K	L	A	D	P	S	I	E	V	T	L	I	E	P	N	T	D	Y	Y	T	C	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	N	E	V	I	G	G	D	R	K	L	E	S	I	K	H
Template Known Secondary structure				.	.							S	T	T										T	T		T	T	S							S		S	S				S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T						T	S	S		G	G	G	G
Template Predicted Secondary structure				.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	2	.	.			.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.																				.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60

	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	W	E	T	L	I	A	S	R	T	A	Y	I	D	R	I	H	T	S	Y	E	N	V	L	G	K	N	N	V	D	V	I	K	G	F	A	R	F	V	D	A	K	T	L	E	V	N	G	E	T	I	T	A	D	H	I	L	I	A	T	G	G	R	P	S	H	P	D	I	P	G	V	E	Y	G	I	D	S	D	G
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	G	Y	D	G	L	R	A	H	G	I	Q	V	V	H	D	S	A	T	G	I	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	D	K	K	L	V	K	T	A	G	G	A	E	F	G	Y	D	R	C	V	V	A	P	G	I	E	L	I	Y	D	K	I	E	G	Y	S	E	E	A	A	A	K	L
Template Known Secondary structure		S						T	T						S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	T						T	S						S													T	T	S	T	T			T	T	G	G	G	T	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.																	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.

	160	.	.	.	.															.	.	.	.	.	170	.	.	.	.	.	.	.	.												.	180	.	.	.	.	.	.	.	.	.	190			.	.	.	.	.	.	.	.	.	200	.	.			.	.	.	.	.	.	.	210
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.													.	.													.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.													.	.													.	.
Query Sequence	F	F	A	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	P	E	R	V	A	V	V	G	A	G	Y	I	.	.	.	.	.	.	.	.	.	.	.	A	V	E	L	A	G	V	I	N	G	L	G	.	.	A	K	T	H	L	F	V	R	K	H	A	P	.	.	L	R	S	F	D	P	M	I
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.													.	.													.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.													.	.													.	.
Template Conservation
Template Sequence	P	H	A	W	K	A	G	E	Q	T	A	I	L	R	K	Q	L	E	D	M	A	D	G	G	T	V	V	I	A	P	P	A	A	P	F	R	C	P	P	G	P	Y	E	R	A	S	Q	V	A	Y	Y	L	K	A	H	K	P	M	S	K	V	I	I	L	D	S	S	Q	T	F	S	K	Q	S	Q	F	S	K	G	W
Template Known Secondary structure					S														S	S		T	T										S	S		B		T	T																		T	T								S		S	S		T	T
Template Predicted Secondary structure
Template SS confidence
	125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.

	211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure
Query SS confidence
Query Sequence	S	E	T	L	V	E	V	M	N	A	E	G	P	Q	L	H	T	N	A	I	P	K	A	V	V	K	N	T	D	G	S	L	T	L	E	L	E	D	G	R	S	E	T	V	D	C	L	I	W	A	I	G	R	E	P	A	N	D	N	I	N	L	E	A	A	G	V	K	T	N	E	K	G	Y	I	V	V	D	K	Y
Query Conservation
Alig confidence																																.																									.	.	.
Template Conservation																																.																									.	.	.
Template Sequence	E	R	L	Y	G	F	G	T	E	N	A	M	I	E	W	H	P	G	P	D	S	A	V	V	K	V	D	G	G	E	M	.	M	V	E	T	A	F	G	D	E	F	K	A	D	V	I	N	L	I	P	P	Q	R	A	G	.	.	.	K	I	A	Q	I	A	G	L	T	N	D	A	G	W	C	P	V	D	I	K	T
Template Known Secondary structure						T	T	T	T	T		S						T	T	T	T				S				T	T	T	.					T	T							S												.	.	.							T			B	T	T	T	B	B		B		S	S	S
Template Predicted Secondary structure																																.																									.	.	.
Template SS confidence
	205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.		.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.				260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

	291	.		.	.	.	.	.	.	.	300	.	.	.	.	.	.	.				.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.				.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure			.																.	.	.																			.	.	.
Query SS confidence			.																.	.	.																			.	.	.
Query Sequence	Q	N	.	T	N	I	E	G	I	Y	A	V	G	D	N	T	G	A	.	.	.	V	E	L	T	P	V	A	V	A	A	G	R	R	L	S	E	R	L	.	.	.	F	N	N	K	P	D	E	H	L	D	Y	S	N	I	P	T	V	V	F	S
Query Conservation			.																.	.	.																			.	.	.
Alig confidence			.																.	.	.																			.	.	.
Template Conservation
Template Sequence	F	E	S	S	I	H	K	G	I	H	V	I	G	D	A	S	I	A	N	P	M	P	K	S	G	Y	S	A	N	S	Q	G	K	V	A	A	A	A	V	V	V	L	L	K	G	E	E	P	G	T	P	S	Y	L	N	T	C	Y	S	I	L	A
Template Known Secondary structure		B	B	S	S	S	T	T					G	G	G	B			S	S	S		B	S																				T	T								B			B
Template Predicted Secondary structure
Template SS confidence
	281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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