Job Description P0A6N8 Confidence 22.44% Date Thu Jan 5 11:03:36 GMT 2012 Rank 53 Aligned Residues 63 % Identity 14% Template c3iyuY_ PDB info PDB header:virus Chain: Y: PDB Molecule:outer capsid protein vp4; PDBTitle: atomic model of an infectious rotavirus particle Resolution 3.80 Å

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		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.										.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.
Query Sequence		D	D	I	V	D	T	V	T	L	T	R	R	Y	V	D	F	S	Y	V	D	G	N	E	Y	V	F	.	.	.	.	.	.	.	.	.	M	D	K	E	D	Y	T	P	Y	T	F	T	K	D	Q	I	E	E	E	L	L	F	M	P	E	G	G	M	P	D	M	Q	V	L	T	W	D	G	Q
Query Conservation																												.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.																											.	.
Template Conservation																																																															.	.
Template Sequence		G	Y	K	W	S	E	I	S	F	K	P	A	N	Y	Q	Y	T	Y	T	R	D	G	E	E	V	T	A	H	T	T	C	S	V	N	G	M	N	D	F	N	F	N	G	G	S	L	P	T	D	F	V	I	S	R	Y	E	V	I	K	E	N	.	.	S	Y	V	Y	V	D	Y	W	D	D	S
Template Known Secondary structure		S																				T	T													S										S	S	T	T	S											T	T	.	.											T
Template Predicted Secondary structure																																																															.	.
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.			.	350	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions