Return to main results Retrieve Phyre Job Id

Job DescriptionP0AGI8
Confidence99.95%DateThu Jan 5 11:29:17 GMT 2012
Rank8Aligned Residues132
% Identity35%Templated1lssa_
SCOP infoNAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains Potassium channel NAD-binding domain
Resolution2.30

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
Predicted Secondary structure 

























Query SS confidence 















































































Query Sequence  MKIIILGAGQVGGTLAENLVGENNDITVVDTNGERLRTLQDKFDLRVVQGHGSHPRVLREAGADDADMLVAVTSSDETNM
Query Conservation 
 


 
 
  
  

  
   
  




 
               
 

      
  
 
  
  

     
  

Alig confidence 















































































Template Conservation 
 




 
  
  
   
   
  



  
                 

      
  
 
  
  

     
  
 
Template Sequence  MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVNL
Template Known Secondary structure 


STT
S

SSS
TTSTTTTT
S

S
Template Predicted Secondary structure 






























Template SS confidence 















































































   1........10.........20.........30.........40.........50.........60.........70.........80
 
   81........90.........100.........110.........120.........130.........
Predicted Secondary structure 











Query SS confidence 


























































Query Sequence  VACQVAYSLFNTPNRIARIRSPDYVRDADKLFHSDAVPIDHLIAPEQLVIDNIYRLIEY
Query Conservation     
 

 
     



                   


 

 
    
  

     
Alig confidence 











.












......


























Template Conservation        
 
   . 


         ...... 
   
 
 

 
    
  
   
  
Template Sequence  MSSLLAKSYGIN. KTIARISEIEYKD. . . . . . VFERLGVDVVVSPELIAANYIEKLIER
Template Known Secondary structure  TT

.

SSTT......TT
S
T
Template Predicted Secondary structure 



.

......






Template SS confidence 


























































   81........90.. .......100..... ....110.........120.........130..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions